WormBase Tree Display for Gene: WBGene00006577
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| WBGene00006577 | SMap | S_parent | Sequence | F39H11 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | tlf-1 | Person_evidence | WBPerson401 | |||||
| Sequence_name | F39H11.2 | ||||||||
| Molecular_name | F39H11.2a | ||||||||
| F39H11.2a.1 | |||||||||
| CE27159 | |||||||||
| F39H11.2b | |||||||||
| CE42480 | |||||||||
| F39H11.2b.1 | |||||||||
| Other_name | CELE_F39H11.2 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | tlf-1 | ||||||||
| DB_info | Database | AceView | gene | 1J274 | |||||
| WormQTL | gene | WBGene00006577 | |||||||
| WormFlux | gene | WBGene00006577 | |||||||
| NDB | locus_tag | CELE_F39H11.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00006577|UniProtKB=B2D6P4 | |||||||
| family | PTHR10126 | ||||||||
| NCBI | gene | 172676 | |||||||
| RefSeq | protein | NM_001129002.4 | |||||||
| NM_059955.7 | |||||||||
| SwissProt | UniProtAcc | B2D6P4 | |||||||
| TREEFAM | TREEFAM_ID | TF300102 | |||||||
| UniProt_GCRP | UniProtAcc | B2D6P4 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:41 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | tlf | ||||||||
| Allele (66) | |||||||||
| Strain | WBStrain00034109 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (17) | |||||||||
| Ortholog (38) | |||||||||
| Paralog | WBGene00006542 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | The tlf-1 gene encodes a TATA binding protein (TBP)-like factor (TLF-1); TLF-1 is a functional transcriptional factor, and is required in vivo for zygotic embryonic RNA polymerase II transcription. | Paper_evidence | WBPaper00004351 | |||||
| WBPaper00004352 | |||||||||
| WBPaper00005068 | |||||||||
| WBPaper00012788 | |||||||||
| WBPaper00012830 | |||||||||
| WBPaper00012882 | |||||||||
| WBPaper00012897 | |||||||||
| WBPaper00013003 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable general transcription initiation factor activity. Involved in embryo development; positive regulation of protein phosphorylation; and regulation of transcription by RNA polymerase II. Located in nucleus. Part of chromatin. Expressed in several structures, including germ line. Is an ortholog of human TBPL1 (TATA-box binding protein like 1). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F39H11.2a | |||||||
| F39H11.2b | |||||||||
| Corresponding_CDS_history | F39H11.2:wp47 | ||||||||
| Corresponding_transcript | F39H11.2a.1 | ||||||||
| F39H11.2b.1 | |||||||||
| Other_sequence (29) | |||||||||
| Associated_feature | WBsf649409 | ||||||||
| WBsf664591 | |||||||||
| WBsf219965 | |||||||||
| WBsf219966 | |||||||||
| WBsf219967 | |||||||||
| WBsf219968 | |||||||||
| Transcription_factor | WBTranscriptionFactor000206 | ||||||||
| WBTranscriptionFactor000215 | |||||||||
| Experimental_info | RNAi_result (28) | ||||||||
| Expr_pattern | Expr1081 | ||||||||
| Expr1813 | |||||||||
| Expr1019956 | |||||||||
| Expr1032711 | |||||||||
| Expr1150670 | |||||||||
| Expr2017415 | |||||||||
| Expr2035554 | |||||||||
| Drives_construct | WBCnstr00010071 | ||||||||
| WBCnstr00034293 | |||||||||
| Construct_product | WBCnstr00010071 | ||||||||
| WBCnstr00034293 | |||||||||
| Antibody | WBAntibody00000317 | ||||||||
| WBAntibody00000318 | |||||||||
| Microarray_results (28) | |||||||||
| Expression_cluster (102) | |||||||||
| Interaction (17) | |||||||||
| Map_info | Map | I | Position | 3.01866 | Error | 0.000402 | |||
| Positive | Positive_clone | F39H11 | Person_evidence | WBPerson401 | |||||
| Inferred_automatically | From sequence, transcript, pseudogene data | ||||||||
| Mapping_data | Multi_point | 4728 | |||||||
| Pseudo_map_position | |||||||||
| Reference (13) | |||||||||
| Remark | sequence connection from (corrected) [Tora L, Mango S] | ||||||||
| This gene was originally named tlp-1 by Susan Mango, in an abstract,and has now been properly published as tlf-1 | |||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
