WormBase Tree Display for Gene: WBGene00005657
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| WBGene00005657 | SMap | S_parent | Sequence | C13D9 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | srr-6 | Person_evidence | WBPerson522 | |||||
| Sequence_name | C13D9.1 | ||||||||
| Molecular_name | C13D9.1 | ||||||||
| C13D9.1.1 | |||||||||
| CE08134 | |||||||||
| Other_name | CELE_C13D9.1 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | srr-6 | ||||||||
| DB_info | Database | AceView | gene | 5F487 | |||||
| WormQTL | gene | WBGene00005657 | |||||||
| WormFlux | gene | WBGene00005657 | |||||||
| NDB | locus_tag | CELE_C13D9.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00005657|UniProtKB=O16246 | |||||||
| family | PTHR31930 | ||||||||
| NCBI | gene | 182569 | |||||||
| RefSeq | protein | NM_071945.3 | |||||||
| TREEFAM | TREEFAM_ID | TF318504 | |||||||
| TrEMBL | UniProtAcc | O16246 | |||||||
| UniProt_GCRP | UniProtAcc | O16246 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:38 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | srr | ||||||||
| Allele (120) | |||||||||
| Strain | WBStrain00003690 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00027568 | ||||||||
| Ortholog (30) | |||||||||
| Paralog | WBGene00005652 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| WBGene00005653 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00005654 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00005655 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00005656 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| WBGene00005661 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00005660 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00005659 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00005658 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to be located in membrane. Expressed in retrovesicular ganglion. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C13D9.1 | |||||||
| Corresponding_transcript | C13D9.1.1 | ||||||||
| Associated_feature | WBsf646790 | ||||||||
| WBsf1019578 | |||||||||
| WBsf231719 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00028844 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00040436 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00066589 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00010685 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram271 | ||||||||
| Expr5255 | |||||||||
| Expr5256 | |||||||||
| Expr14128 | |||||||||
| Expr1027902 | |||||||||
| Expr1144503 | |||||||||
| Expr2016615 | |||||||||
| Expr2034806 | |||||||||
| Drives_construct | WBCnstr00003847 | ||||||||
| WBCnstr00004126 | |||||||||
| WBCnstr00034816 | |||||||||
| Construct_product | WBCnstr00034816 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (250) | |||||||||
| Interaction | WBInteraction000217360 | ||||||||
| WBInteraction000437254 | |||||||||
| WBInteraction000504175 | |||||||||
| WBInteraction000543503 | |||||||||
| Map_info | Map | V | Position | -3.59456 | Error | 0.001599 | |||
| Positive | Positive_clone | C13D9 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00053737 | ||||||||
| Remark | Sequence connection from [Roberston H] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
