WormBase Tree Display for Gene: WBGene00005655
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| WBGene00005655 | SMap | S_parent | Sequence | K11D12 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | srr-4 | Person_evidence | WBPerson522 | |||||
| Sequence_name | K11D12.3 | ||||||||
| Molecular_name | K11D12.3a | ||||||||
| K11D12.3a.1 | |||||||||
| CE30386 | |||||||||
| K11D12.3b | |||||||||
| CE41248 | |||||||||
| K11D12.3b.1 | |||||||||
| Other_name | CELE_K11D12.3 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | srr-4 | ||||||||
| DB_info | Database | WormQTL | gene | WBGene00005655 | |||||
| WormFlux | gene | WBGene00005655 | |||||||
| NDB | locus_tag | CELE_K11D12.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00005655|UniProtKB=H2KYR4 | |||||||
| family | PTHR31930 | ||||||||
| NCBI | gene | 187292 | |||||||
| RefSeq | protein | NM_001129504.4 | |||||||
| NM_071946.10 | |||||||||
| TREEFAM | TREEFAM_ID | TF318504 | |||||||
| TrEMBL | UniProtAcc | H2KYR4 | |||||||
| O44618 | |||||||||
| UniProt_GCRP | UniProtAcc | H2KYR4 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:38 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | srr | ||||||||
| Allele (134) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00021838 | ||||||||
| 00032962 | |||||||||
| Ortholog (28) | |||||||||
| Paralog | WBGene00005652 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| WBGene00005653 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00005654 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00005661 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00005660 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00005659 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00005658 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00005657 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00005656 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Structured_description | Automated_description | Involved in determination of adult lifespan. Predicted to be located in membrane. Expressed in head neurons; hypodermis; pharynx; phasmid neurons; and vulva. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | K11D12.3a | |||||||
| K11D12.3b | |||||||||
| Corresponding_CDS_history | K11D12.3:wp177 | ||||||||
| Corresponding_transcript | K11D12.3a.1 | ||||||||
| K11D12.3b.1 | |||||||||
| Other_sequence | CJC04006_1 | ||||||||
| Associated_feature | WBsf646791 | ||||||||
| WBsf718299 | |||||||||
| WBsf999916 | |||||||||
| WBsf999917 | |||||||||
| WBsf1019579 | |||||||||
| WBsf231720 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00050588 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00017008 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00034279 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr14127 | ||||||||
| Expr1018364 | |||||||||
| Expr1032524 | |||||||||
| Expr1154295 | |||||||||
| Expr2016614 | |||||||||
| Expr2034805 | |||||||||
| Drives_construct | WBCnstr00034817 | ||||||||
| Construct_product | WBCnstr00034817 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (273) | |||||||||
| Interaction | WBInteraction000152781 | ||||||||
| WBInteraction000214709 | |||||||||
| WBInteraction000218671 | |||||||||
| WBInteraction000270241 | |||||||||
| WBInteraction000285371 | |||||||||
| WBInteraction000336541 | |||||||||
| WBInteraction000407648 | |||||||||
| WBInteraction000447003 | |||||||||
| WBInteraction000553062 | |||||||||
| WBInteraction000580416 | |||||||||
| Map_info | Map | V | Position | -3.59095 | Error | 0.001494 | |||
| Positive | Positive_clone | K11D12 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00048383 | ||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
