WormBase Tree Display for Gene: WBGene00001626
expand all nodes | collapse all nodes | view schema
| WBGene00001626 | SMap | S_parent | Sequence | F44F4 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | gly-1 | Person_evidence | WBPerson228 | |||||
| Sequence_name | F44F4.6 | ||||||||
| Molecular_name | F44F4.6 | ||||||||
| F44F4.6.1 | |||||||||
| CE01002 | |||||||||
| Other_name | CELE_F44F4.6 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | gly-1 | ||||||||
| DB_info | Database | AceView | gene | 2L190 | |||||
| WormQTL | gene | WBGene00001626 | |||||||
| SignaLink | protein | WBGene00001626 | |||||||
| WormFlux | gene | WBGene00001626 | |||||||
| NDB | locus_tag | CELE_F44F4.6 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00001626|UniProtKB=G5ECK8 | |||||||
| family | PTHR19297 | ||||||||
| NCBI | gene | 174679 | |||||||
| RefSeq | protein | NM_063944.8 | |||||||
| TrEMBL | UniProtAcc | G5ECK8 | |||||||
| UniProt_GCRP | UniProtAcc | G5ECK8 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:25 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | gly | ||||||||
| Allele (37) | |||||||||
| Strain | WBStrain00029128 | ||||||||
| WBStrain00040600 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00011993 | ||||||||
| 00011994 | |||||||||
| 00011995 | |||||||||
| 00011996 | |||||||||
| 00011997 | |||||||||
| 00011998 | |||||||||
| 00109169 | |||||||||
| 00109170 | |||||||||
| Ortholog (42) | |||||||||
| Paralog (19) | |||||||||
| Structured_description | Concise_description | gly-1 encodes a transmembrane glycosyltransferase similar to 2/I N-acetylglucosaminyltransferase; in vitro, GLY-1 demonstrates UDP-Glc:GalB1-3GalNac-R glucosyltransferase activity; gly-1 expression is detected in adult hypodermal seam cells and possibly some neurons adjacent to the anterior bulb of the pharynx; neither gly-1 loss-of-function mutations nor RNA mediated interference (RNAi) result in any obvious abnormalities, suggesting that gly-1 function is not essential for C. elegans development and/or behavior. | Paper_evidence | WBPaper00005030 | |||||
| WBPaper00005185 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable glycosyltransferase activity. Predicted to be located in Golgi membrane. Expressed in pharyngeal neurons and seam cell. Is an ortholog of several human genes including GCNT1 (glucosaminyl (N-acetyl) transferase 1); GCNT3 (glucosaminyl (N-acetyl) transferase 3, mucin type); and GCNT4 (glucosaminyl (N-acetyl) transferase 4). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F44F4.6 | |||||||
| Corresponding_transcript | F44F4.6.1 | ||||||||
| Other_sequence | AY037792 | ||||||||
| AY037793 | |||||||||
| XI05459 | |||||||||
| XIC04039_1 | |||||||||
| PPC07020_1 | |||||||||
| Associated_feature | WBsf223857 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00047325 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00014957 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00000777 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1782 | ||||||||
| Expr1019724 | |||||||||
| Expr1151176 | |||||||||
| Expr2012140 | |||||||||
| Expr2030376 | |||||||||
| Drives_construct | WBCnstr00010439 | ||||||||
| WBCnstr00036814 | |||||||||
| Construct_product | WBCnstr00036814 | ||||||||
| Microarray_results (17) | |||||||||
| Expression_cluster (89) | |||||||||
| Interaction | WBInteraction000122986 | ||||||||
| WBInteraction000126352 | |||||||||
| WBInteraction000126353 | |||||||||
| WBInteraction000126355 | |||||||||
| WBInteraction000166763 | |||||||||
| WBInteraction000329980 | |||||||||
| Map_info | Map | II | Position | 3.13243 | |||||
| Positive | Positive_clone | F44F4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 4358 | |||||||
| 4695 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00005030 | ||||||||
| WBPaper00005185 | |||||||||
| WBPaper00023337 | |||||||||
| WBPaper00029024 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00065080 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| [200225 pad] Modified Map position as it was a reverse physical that could not be fixed by automated methods. (3.13163) | |||||||||
| Method | Gene |
