WormBase Tree Display for Gene: WBGene00015479
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| WBGene00015479 | SMap | S_parent | Sequence | C05D10 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | wht-1 | Person_evidence | WBPerson253 | |||||
| Sequence_name | C05D10.3 | ||||||||
| Molecular_name | C05D10.3a | ||||||||
| C05D10.3a.1 | |||||||||
| CE52537 | |||||||||
| C05D10.3b | |||||||||
| CE52612 | |||||||||
| C05D10.3b.1 | |||||||||
| Other_name | CELE_C05D10.3 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | wht-1 | ||||||||
| DB_info | Database | AceView | gene | 3H174 | |||||
| WormQTL | gene | WBGene00015479 | |||||||
| WormFlux | gene | WBGene00015479 | |||||||
| NDB | locus_tag | CELE_C05D10.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00015479|UniProtKB=Q11180 | |||||||
| family | PTHR48041 | ||||||||
| NCBI | gene | 175859 | |||||||
| RefSeq | protein | NM_001361720.3 | |||||||
| NM_001361719.2 | |||||||||
| SwissProt | UniProtAcc | Q11180 | |||||||
| UniProt_GCRP | UniProtAcc | Q11180 | |||||||
| OMIM | gene | 603756 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:56 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 04 Jun 2007 15:54:19 | WBPerson2970 | Name_change | CGC_name | wht-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | wht | ||||||||
| Allele (36) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (16) | |||||||||
| Ortholog (47) | |||||||||
| Paralog | WBGene00006522 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00007060 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00007513 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00007631 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00008950 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00012925 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00017179 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00021535 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00016973 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | C05D10.3 encodes an ATP-binding cassette (ABC) transporter; C05D10.3 activity is required for efficient RNA interference (RNAi) of a germline-expressed target, pop-1. | Paper_evidence | WBPaper00027644 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 09 Mar 2007 00:00:00 | ||||||||
| Automated_description | Predicted to enable ATPase-coupled transmembrane transporter activity. Involved in regulatory ncRNA-mediated post-transcriptional gene silencing. Predicted to be located in plasma membrane. Human ortholog(s) of this gene implicated in several diseases, including gout; hematologic cancer (multiple); and toxic encephalopathy. Is an ortholog of human ABCG2 (ATP binding cassette subfamily G member 2 (JR blood group)). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:8552 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:74) | ||||
| DOID:3602 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:74) | ||||||
| DOID:3459 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:74) | ||||||
| DOID:707 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:74) | ||||||
| DOID:4450 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:74) | ||||||
| DOID:9952 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:74) | ||||||
| DOID:8761 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:74) | ||||||
| DOID:13189 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:74) | ||||||
| DOID:9538 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:74) | ||||||
| DOID:9119 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:74) | ||||||
| Molecular_info | Corresponding_CDS | C05D10.3a | |||||||
| C05D10.3b | |||||||||
| Corresponding_CDS_history | C05D10.3:wp263 | ||||||||
| Corresponding_transcript | C05D10.3a.1 | ||||||||
| C05D10.3b.1 | |||||||||
| Other_sequence | JO472040.1 | ||||||||
| BUC01992_1 | |||||||||
| JI168809.1 | |||||||||
| MAC00309_1 | |||||||||
| HC08928 | |||||||||
| HCC12092_1 | |||||||||
| MA00856 | |||||||||
| CBC06624_1 | |||||||||
| Associated_feature | WBsf666955 | ||||||||
| WBsf717914 | |||||||||
| WBsf992631 | |||||||||
| WBsf226758 | |||||||||
| WBsf226759 | |||||||||
| WBsf226760 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00010194 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00039722 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00005372 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00028489 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram2001 | ||||||||
| Expr5165 | |||||||||
| Expr1015874 | |||||||||
| Expr1036619 | |||||||||
| Expr1143819 | |||||||||
| Expr2018062 | |||||||||
| Expr2036199 | |||||||||
| Drives_construct | WBCnstr00002025 | ||||||||
| WBCnstr00028814 | |||||||||
| Construct_product | WBCnstr00028814 | ||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (167) | |||||||||
| Interaction | WBInteraction000114198 | ||||||||
| WBInteraction000114199 | |||||||||
| WBInteraction000114200 | |||||||||
| WBInteraction000114201 | |||||||||
| WBInteraction000123461 | |||||||||
| WBInteraction000235719 | |||||||||
| WBInteraction000333604 | |||||||||
| Map_info | Map | III | Position | -1.42088 | Error | 0.0006 | |||
| Positive | Positive_clone | C05D10 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027155 | ||||||||
| WBPaper00027644 | |||||||||
| WBPaper00031484 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
