WormBase Tree Display for Gene: WBGene00016973
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| WBGene00016973 | SMap | S_parent | Sequence | C56E6 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | abch-1 | Paper_evidence | WBPaper00028961 | |||||
| Sequence_name | C56E6.5 | ||||||||
| Molecular_name | C56E6.5 | ||||||||
| C56E6.5.1 | |||||||||
| CE04277 | |||||||||
| Other_name | CELE_C56E6.5 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | abch-1 | ||||||||
| DB_info | Database | AceView | gene | 2G820 | |||||
| WormQTL | gene | WBGene00016973 | |||||||
| WormFlux | gene | WBGene00016973 | |||||||
| NDB | locus_tag | CELE_C56E6.5 | |||||||
| NCBI | gene | 174078 | |||||||
| RefSeq | protein | NM_062919.5 | |||||||
| TREEFAM | TREEFAM_ID | TF105212 | |||||||
| TrEMBL | UniProtAcc | Q18900 | |||||||
| UniProt_GCRP | UniProtAcc | Q18900 | |||||||
| OMIM | gene | 605459 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:58 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 21 Jun 2007 14:37:04 | WBPerson2970 | Name_change | CGC_name | abch-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | abch | ||||||||
| Allele (30) | |||||||||
| Strain | WBStrain00001141 | ||||||||
| WBStrain00032338 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00062741 | ||||||||
| 00062742 | |||||||||
| 00062743 | |||||||||
| 00062744 | |||||||||
| 00062745 | |||||||||
| 00062746 | |||||||||
| 00122473 | |||||||||
| 00122474 | |||||||||
| Ortholog (27) | |||||||||
| Paralog | WBGene00006522 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00007060 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00007513 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00007631 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00008950 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00012925 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00015479 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00021535 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00017179 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to enable ATPase-coupled transmembrane transporter activity. Predicted to be involved in transmembrane transport. Predicted to be located in plasma membrane. Predicted to be part of ATP-binding activity cassette (ABC) transporter complex. Expressed in head. Human ortholog(s) of this gene implicated in arteriosclerosis and sitosterolemia. Is an ortholog of human ABCG5 (ATP binding cassette subfamily G member 5). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:2349 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:13886) | ||||
| DOID:0090019 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:13886) | ||||||
| Molecular_info | Corresponding_CDS | C56E6.5 | |||||||
| Corresponding_transcript | C56E6.5.1 | ||||||||
| Associated_feature | WBsf650157 | ||||||||
| WBsf988196 | |||||||||
| WBsf223194 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00043280 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00030207 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00012467 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr5598 | ||||||||
| Expr1024117 | |||||||||
| Expr1147258 | |||||||||
| Expr2009077 | |||||||||
| Expr2027313 | |||||||||
| Drives_construct | WBCnstr00002037 | ||||||||
| WBCnstr00027666 | |||||||||
| Construct_product | WBCnstr00027666 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (102) | |||||||||
| Map_info | Map | II | Position | -0.1882 | Error | 0.003693 | |||
| Positive | Positive_clone | C56E6 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00015815 | ||||||||
| WBPaper00031484 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
