WormBase Tree Display for Gene: WBGene00021535
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| WBGene00021535 | SMap | S_parent | Sequence | Y42G9A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | wht-7 | Person_evidence | WBPerson253 | |||||
| Sequence_name | Y42G9A.6 | ||||||||
| Molecular_name (24) | |||||||||
| Other_name | CELE_Y42G9A.6 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | wht-7 | ||||||||
| DB_info | Database | WormQTL | gene | WBGene00021535 | |||||
| WormFlux | gene | WBGene00021535 | |||||||
| NDB | locus_tag | CELE_Y42G9A.6 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00021535|UniProtKB=H2L028 | |||||||
| family | PTHR48041 | ||||||||
| NCBI | gene | 175864 | |||||||
| RefSeq | protein | NM_001404161.1 | |||||||
| NM_001404164.1 | |||||||||
| NM_001404162.1 | |||||||||
| NM_001404160.1 | |||||||||
| NM_001404165.1 | |||||||||
| NM_001379747.1 | |||||||||
| NM_001404163.1 | |||||||||
| NM_001379748.1 | |||||||||
| TREEFAM | TREEFAM_ID | TF314901 | |||||||
| TrEMBL | UniProtAcc | A0A8S4QBW8 | |||||||
| A0A8S4QFC8 | |||||||||
| A0A8S4QD72 | |||||||||
| A0A8S4QAZ9 | |||||||||
| H2L028 | |||||||||
| A0A8S4Q9J2 | |||||||||
| A0A9R9 | |||||||||
| A0A8S4QGL9 | |||||||||
| UniProt_GCRP | UniProtAcc | A0A8S4QGL9 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:04 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 04 Jun 2007 15:54:19 | WBPerson2970 | Name_change | CGC_name | wht-7 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | wht | ||||||||
| Allele (106) | |||||||||
| Strain | WBStrain00031644 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (11) | |||||||||
| Ortholog (35) | |||||||||
| Paralog | WBGene00006522 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00007060 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00007513 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00007631 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00008950 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00012925 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00015479 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00016973 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00017179 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to enable ATPase-coupled transmembrane transporter activity. Predicted to be involved in transmembrane transport. Predicted to be located in plasma membrane. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y42G9A.6a | |||||||
| Y42G9A.6b | |||||||||
| Y42G9A.6c | |||||||||
| Y42G9A.6d | |||||||||
| Y42G9A.6e | |||||||||
| Y42G9A.6f | |||||||||
| Y42G9A.6g | |||||||||
| Y42G9A.6h | |||||||||
| Corresponding_CDS_history | Y42G9A.6:wp92 | ||||||||
| Y42G9A.6:wp154 | |||||||||
| Y42G9A.6a:wp275 | |||||||||
| Y42G9A.6b:wp275 | |||||||||
| Corresponding_transcript | Y42G9A.6a.1 | ||||||||
| Y42G9A.6b.1 | |||||||||
| Y42G9A.6c.1 | |||||||||
| Y42G9A.6d.1 | |||||||||
| Y42G9A.6e.1 | |||||||||
| Y42G9A.6f.1 | |||||||||
| Y42G9A.6g.1 | |||||||||
| Y42G9A.6h.1 | |||||||||
| Other_sequence (45) | |||||||||
| Associated_feature (13) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00006897 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00056432 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00020514 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00007111 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00056440 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00000316 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00056434 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00037024 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00056439 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1017633 | ||||||||
| Expr1039416 | |||||||||
| Expr1159917 | |||||||||
| Expr2018068 | |||||||||
| Expr2036205 | |||||||||
| Drives_construct | WBCnstr00024514 | ||||||||
| Construct_product | WBCnstr00024514 | ||||||||
| Microarray_results (31) | |||||||||
| Expression_cluster (136) | |||||||||
| Interaction (11) | |||||||||
| Map_info | Map | III | Position | -1.41369 | Error | 0.000795 | |||
| Positive | Positive_clone | Y42G9A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027644 | ||||||||
| WBPaper00031484 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00061990 | |||||||||
| WBPaper00063068 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
