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WormBase Tree Display for Gene: WBGene00016973

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Name Class

WBGene00016973SMapS_parentSequenceC56E6
IdentityVersion2
NameCGC_nameabch-1Paper_evidenceWBPaper00028961
Sequence_nameC56E6.5
Molecular_nameC56E6.5
C56E6.5.1
CE04277
Other_nameCELE_C56E6.5Accession_evidenceNDBBX284602
Public_nameabch-1
DB_infoDatabaseAceViewgene2G820
WormQTLgeneWBGene00016973
WormFluxgeneWBGene00016973
NDBlocus_tagCELE_C56E6.5
NCBIgene174078
RefSeqproteinNM_062919.5
TREEFAMTREEFAM_IDTF105212
TrEMBLUniProtAccQ18900
UniProt_GCRPUniProtAccQ18900
OMIMgene605459
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:30:58WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
221 Jun 2007 14:37:04WBPerson2970Name_changeCGC_nameabch-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classabch
Allele (30)
StrainWBStrain00001141
WBStrain00032338
RNASeq_FPKM (74)
GO_annotation00062741
00062742
00062743
00062744
00062745
00062746
00122473
00122474
Ortholog (27)
ParalogWBGene00006522Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00007060Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00007513Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00007631Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00008950Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00012925Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00015479Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00021535Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00017179Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable ATPase-coupled transmembrane transporter activity. Predicted to be involved in transmembrane transport. Predicted to be located in plasma membrane. Predicted to be part of ATP-binding activity cassette (ABC) transporter complex. Expressed in head. Human ortholog(s) of this gene implicated in arteriosclerosis and sitosterolemia. Is an ortholog of human ABCG5 (ATP binding cassette subfamily G member 5).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_modelDOID:2349Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:13886)
DOID:0090019Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:13886)
Molecular_infoCorresponding_CDSC56E6.5
Corresponding_transcriptC56E6.5.1
Associated_featureWBsf650157
WBsf988196
WBsf223194
Experimental_infoRNAi_resultWBRNAi00043280Inferred_automaticallyRNAi_primary
WBRNAi00030207Inferred_automaticallyRNAi_primary
WBRNAi00012467Inferred_automaticallyRNAi_primary
Expr_patternExpr5598
Expr1024117
Expr1147258
Expr2009077
Expr2027313
Drives_constructWBCnstr00002037
WBCnstr00027666
Construct_productWBCnstr00027666
Microarray_results (19)
Expression_clusterWBPaper00037950:all-neurons_L1-larva_expressed
WBPaper00037950:AVE-neuron_L1-larva_expressed
WBPaper00037950:bodywall-muscle_L1-larva_expressed
WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
WBPaper00037950:hypodermis_L1-larva_expressed
WBPaper00037950:intestine_L2-larva_expressed
WBPaper00038438:E.faecalis_24hr_upregulated_RNAseq
WBPaper00038438:Harposporium_24hr_upregulated_RNAseq
WBPaper00038438:P.lumniescens_24hr_upregulated_RNAseq
WBPaper00038438:S.marcescens_24hr_upregulated_RNAseq
WBPaper00044736:oscillating_dev_expression
WBPaper00044786:emr-1(RNAi);lem-2(tm1582)_upregulated
WBPaper00045420:fertilization_downregulated_transcript
WBPaper00045774:clk-1_downregulated
WBPaper00046415:lithium_downregulated
WBPaper00048923:Aging_regulated
WBPaper00048988:neuron_expressed
WBPaper00049545:cco-1(RNAi)_upregulated
WBPaper00049545:jmjd-3.1(+)_upregulated
WBPaper00050488:20C_vs_25C_regulated_mir-34(OverExpression)_adult
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050496:unc-39(hp701)_regulated
WBPaper00050801:DAF-12_dauer_regulome
WBPaper00050801:DAF-16_dauer_regulome
WBPaper00053388:dauer_regulated_Cluster5
WBPaper00054758:alg-1(gk204)_upregulated
WBPaper00055354:Rapamycin-Rifampicin_upregulated
WBPaper00055354:Rifampicin-Psora_upregulated
WBPaper00055862:antimycin_damt-1(gk961032)_regulated
WBPaper00055971:nhl-2(ok818)_25C_downregulated
WBPaper00056443:sek-1(km4)_upregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
WBPaper00056809:smn-1(ok355)_downregulated
WBPaper00057041:spc-1(cas971)_upregulated
WBPaper00057041:unc-70(cas983)_upregulated
WBPaper00058598:mex-1(or286)_upregulated
WBPaper00058598:mex-3(eu149)_upregulated
WBPaper00058598:sin-3(tm1276)_downregulated
WBPaper00058598:spn-4(tm291)_upregulated
WBPaper00058969:RIS_depleted
WBPaper00059117:B.subtilis_upregulated
WBPaper00059664:srbc-48(ac23)_upregulated
WBPaper00059987:Wounding_upregulated
WBPaper00060014:set-2(tm1630)_downregulated
WBPaper00060445:nfki-1(cer1)_downregulated_L4
WBPaper00060459:bcat-1(RNAi)_upregulated
WBPaper00060661:sensory-neuron_enriched
WBPaper00060909:atfs-1(cmh15)_downregulated
WBPaper00061203:sin-3(tm1276)_upregulated
WBPaper00061340:ADEsh
WBPaper00061340:AIY
WBPaper00061340:AMso
WBPaper00061340:ant_arc_V
WBPaper00061340:B_F_K_Kp_U_Y
WBPaper00061340:CEPso
WBPaper00061340:Excretory_duct_and_pore
WBPaper00061340:hyp1V_and_ant_arc_V
WBPaper00061340:hyp3
WBPaper00061340:ILso
WBPaper00061340:Y
WBPaper00061341:28C_24h_upregulated
WBPaper00061341:28C_48h_upregulated
WBPaper00061357:mett-10(ok2204)_downregulated_OP50
WBPaper00061424:Diet_MYb120_upregulated
WBPaper00061527:F28G4.4-ZK829.3_6652
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062193:daf-16(RNAi)_upregulated
WBPaper00062440:crh-1(n3315)_downregulated
WBPaper00062585:hlh-26(ok1453)_upregulated_E.faecium
WBPaper00062590:Aging_downregulated_neuron
WBPaper00064088:Day-1-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-1-adult_vs_L4_downregulated_fem-3(q20)
WBPaper00064088:Day-1-adult_vs_L4_downregulated_glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
WBPaper00064509:static-magnetic-field_upregulated
WBPaper00064871:PA14_downregulated_AWA
WBPaper00065096:25C_vs_20C_downregulated
WBPaper00065096:Day10_vs_Day1_downregulated
WBPaper00065746:eat-2(ad1113)_downregulated
WBPaper00065841:30_2
WBPaper00065841:30_5
WBPaper00065841:34_0
WBPaper00065841:34_1
WBPaper00065841:64_0
WBPaper00065841:82_1
WBPaper00066062:xrep-4(lax137)_upregulated
WBPaper00066110:tetraploid_vs_diploid_upregulated
WBPaper00025141:N2_Expressed_Genes
WBPaper00025141:unc-4::GFP_Expressed_Genes
WBPaper00032948:FedUp
WBPaper00032948:MoltOssilate
WBPaper00034739:N2lessDR1350
WBPaper00035905:FBF-1_Associated
WBPaper00036286:Pattern_G
WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
WBPaper00047070:N2_starvation_downregulated
WBPaper00048989:eat-2(ad465)_downregulated_in-DMSO
WBPaper00048989:N2_allantoin_downregulated
WBPaper00048989:N2_rapamycin_upregulated
WBPaper00056330:mrps-5(RNAi)_upregulated
Map_infoMapIIPosition-0.1882Error0.003693
PositivePositive_cloneC56E6Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00015815
WBPaper00031484
WBPaper00038491
WBPaper00055090
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene