WormBase Tree Display for Gene: WBGene00003960
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| WBGene00003960 | SMap | S_parent | Sequence | F54D5 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | pcs-1 | Person_evidence | WBPerson819 | |||||
| Sequence_name | F54D5.1 | ||||||||
| Molecular_name | F54D5.1a | ||||||||
| F54D5.1a.1 | |||||||||
| CE40964 | |||||||||
| F54D5.1b | |||||||||
| CE40965 | |||||||||
| F54D5.1b.1 | |||||||||
| Other_name | TFIIE-beta | Accession_evidence | EMBL | Y08815 | |||||
| CePCS | Paper_evidence | WBPaper00037940 | |||||||
| CELE_F54D5.1 | Accession_evidence | NDB | BX284602 | ||||||
| Public_name | pcs-1 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:33 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | pcs | ||||||||
| Allele (47) | |||||||||
| Strain | WBStrain00039997 | ||||||||
| WBStrain00040000 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (24) | |||||||||
| Ortholog (25) | |||||||||
| Structured_description | Concise_description | pcs-1 encodes a phytochelatin synthase; PCS-1 exhibits cadmium-activated synthesis of phytochelatins, peptides with the general structure (gamma-Glu-Cys)n-Xaa that sequester heavy metals, and is required in animals for the response to, and detoxification of cadmium; when expressed in yeast, PCS-1 also mediates the detoxification of mercury and arsenic. | Paper_evidence | WBPaper00004738 | |||||
| WBPaper00025092 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 12 Mar 2010 00:00:00 | ||||||||
| Automated_description | Enables glutathione gamma-glutamylcysteinyltransferase activity. Involved in phytochelatin biosynthetic process and response to metal ion. Expressed in several structures, including coelomocyte; non-striated muscle; pharyngeal-intestinal valve; pharynx; and rectal valve cell. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F54D5.1a | |||||||
| F54D5.1b | |||||||||
| Corresponding_CDS_history | F54D5.1:wp175 | ||||||||
| Corresponding_transcript | F54D5.1a.1 | ||||||||
| F54D5.1b.1 | |||||||||
| Other_sequence (29) | |||||||||
| Associated_feature | WBsf650596 | ||||||||
| WBsf666168 | |||||||||
| WBsf981287 | |||||||||
| WBsf223963 | |||||||||
| Experimental_info | RNAi_result (11) | ||||||||
| Expr_pattern | Chronogram598 | ||||||||
| Expr108 | |||||||||
| Expr3101 | |||||||||
| Expr9005 | |||||||||
| Expr1025837 | |||||||||
| Expr1031884 | |||||||||
| Expr1152108 | |||||||||
| Expr2014789 | |||||||||
| Expr2033023 | |||||||||
| Drives_construct | WBCnstr00002739 | ||||||||
| WBCnstr00007021 | |||||||||
| WBCnstr00011137 | |||||||||
| WBCnstr00035773 | |||||||||
| Construct_product | WBCnstr00035773 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (112) | |||||||||
| Interaction | WBInteraction000313166 | ||||||||
| WBInteraction000524519 | |||||||||
| WBInteraction000566350 | |||||||||
| WBInteraction000566629 | |||||||||
| WBInteraction000576338 | |||||||||
| WBProcess | WBbiopr:00000065 | ||||||||
| WBbiopr:00000096 | |||||||||
| Map_info | Map | II | Position | 3.768 | Error | 0.004725 | |||
| Positive | Positive_clone | F54D5 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 5063 | |||||||
| 5479 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (17) | |||||||||
| Remark | Sequence connection from [Vatamaniuk OK, Bucher EA]. krb 13/11/01 | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
