WormBase Tree Display for Gene: WBGene00003960

WBGene00003960 SMap: S_parent: Sequence: F54D5
  Identity: Version: 1
    Name: CGC_name: pcs-1 Person_evidence: WBPerson819
      Sequence_name: F54D5.1
      Molecular_name: F54D5.1a
        F54D5.1a.1
        CE40964
        F54D5.1b
        CE40965
        F54D5.1b.1
      Other_name: TFIIE-beta Accession_evidence: EMBL Y08815
        CePCS Paper_evidence: WBPaper00037940
        CELE_F54D5.1 Accession_evidence: NDB BX284602
      Public_name: pcs-1
    DB_info: Database (11)
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:33 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: pcs
    Allele (47)
    Strain: WBStrain00039997
      WBStrain00040000
    RNASeq_FPKM (74)
    GO_annotation (24)
    Ortholog: WBGene00053601 Caenorhabditis remanei From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00025825 Caenorhabditis briggsae From_analysis: OrthoMCL
            Inparanoid_8
            WormBase-Compara
      WBGene00143839 Caenorhabditis brenneri From_analysis: TreeFam
            WormBase-Compara
      WBGene00121851 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00143345 Caenorhabditis brenneri From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00113394 Pristionchus pacificus From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00224620 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g7532 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g12974 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g3701 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g5650 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g12391 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g27207 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g13067 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g18807 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g17206 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g17832 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cni-pcs-1 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold473.g1675 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_01507.g21353 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_14150 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_005310 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g14418 Oscheius tipulae From_analysis: WormBase-Compara
      Sp34_20326200 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrII_pilon.g5989 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Concise_description: pcs-1 encodes a phytochelatin synthase; PCS-1 exhibits cadmium-activated synthesis of phytochelatins, peptides with the general structure (gamma-Glu-Cys)n-Xaa that sequester heavy metals, and is required in animals for the response to, and detoxification of cadmium; when expressed in yeast, PCS-1 also mediates the detoxification of mercury and arsenic. Paper_evidence: WBPaper00004738
            WBPaper00025092
          Curator_confirmed: WBPerson1843
          Date_last_updated: 12 Mar 2010 00:00:00
      Automated_description: Enables glutathione gamma-glutamylcysteinyltransferase activity. Involved in phytochelatin biosynthetic process and response to metal ion. Expressed in several structures, including coelomocyte; non-striated muscle; pharyngeal-intestinal valve; pharynx; and rectal valve cell. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F54D5.1a
      F54D5.1b
    Corresponding_CDS_history: F54D5.1:wp175
    Corresponding_transcript: F54D5.1a.1
      F54D5.1b.1
    Other_sequence (29)
    Associated_feature: WBsf650596
      WBsf666168
      WBsf981287
      WBsf223963
  Experimental_info: RNAi_result (11)
    Expr_pattern: Chronogram598
      Expr108
      Expr3101
      Expr9005
      Expr1025837
      Expr1031884
      Expr1152108
      Expr2014789
      Expr2033023
    Drives_construct: WBCnstr00002739
      WBCnstr00007021
      WBCnstr00011137
      WBCnstr00035773
    Construct_product: WBCnstr00035773
    Microarray_results (20)
    Expression_cluster (112)
    Interaction: WBInteraction000313166
      WBInteraction000524519
      WBInteraction000566350
      WBInteraction000566629
      WBInteraction000576338
    WBProcess: WBbiopr:00000065
      WBbiopr:00000096
  Map_info: Map: II Position: 3.768 Error: 0.004725
    Positive: Positive_clone: F54D5 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Mapping_data: Multi_point: 5063
        5479
    Pseudo_map_position
  Reference (17)
  Remark: Sequence connection from [Vatamaniuk OK, Bucher EA]. krb 13/11/01
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene