WormBase Tree Display for Gene: WBGene00006979
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| WBGene00006979 | SMap | S_parent | Sequence | F42F12 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | zig-2 | Person_evidence | WBPerson260 | |||||
| Sequence_name | F42F12.2 | ||||||||
| Molecular_name | F42F12.2 | ||||||||
| F42F12.2.1 | |||||||||
| CE03313 | |||||||||
| Other_name | CELE_F42F12.2 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | zig-2 | ||||||||
| DB_info | Database | AceView | gene | XM956 | |||||
| WormQTL | gene | WBGene00006979 | |||||||
| WormFlux | gene | WBGene00006979 | |||||||
| NDB | locus_tag | CELE_F42F12.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00006979|UniProtKB=G5EDQ9 | |||||||
| family | PTHR10075 | ||||||||
| NCBI | gene | 192087 | |||||||
| RefSeq | protein | NM_077668.5 | |||||||
| SwissProt | UniProtAcc | G5EDQ9 | |||||||
| TREEFAM | TREEFAM_ID | TF343606 | |||||||
| UniProt_GCRP | UniProtAcc | G5EDQ9 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:44 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | zig | ||||||||
| Allele (19) | |||||||||
| Strain | WBStrain00029476 | ||||||||
| WBStrain00031575 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00014509 | ||||||||
| 00014510 | |||||||||
| Ortholog (26) | |||||||||
| Paralog (24) | |||||||||
| Structured_description | Concise_description | zig-2 encodes a predicted secreted protein that is a member of the immunoglobulin superfamily of proteins; a zig-2::gfp reporter fusion is expressed in the PVT interneuron and weakly in 4-6 additional head neurons. | Paper_evidence | WBPaper00005064 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 14 Jan 2008 00:00:00 | ||||||||
| Automated_description | Predicted to be involved in axon guidance and cell adhesion. Predicted to be located in extracellular region and plasma membrane. Expressed in ASIL; ASIR; PVT; and head neurons. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F42F12.2 | |||||||
| Corresponding_transcript | F42F12.2.1 | ||||||||
| Other_sequence | AF456249 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00047103 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00032140 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00014826 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1748 | ||||||||
| Expr1013893 | |||||||||
| Expr1150969 | |||||||||
| Expr2018141 | |||||||||
| Expr2036278 | |||||||||
| Marker111 | |||||||||
| Drives_construct | WBCnstr00001542 | ||||||||
| WBCnstr00001543 | |||||||||
| WBCnstr00034056 | |||||||||
| Construct_product | WBCnstr00006629 | ||||||||
| WBCnstr00006630 | |||||||||
| WBCnstr00034056 | |||||||||
| Microarray_results (16) | |||||||||
| Expression_cluster (145) | |||||||||
| Interaction (13) | |||||||||
| Map_info | Map | X | Position | 7.03133 | Error | 0.001219 | |||
| Positive | Positive_clone | F42F12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 4210 | |||||||
| 4765 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (11) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
