WormBase Tree Display for Gene: WBGene00008907
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| WBGene00008907 | SMap | S_parent | Sequence | F17B5 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | clec-109 | Person_evidence | WBPerson2531 | |||||
| Sequence_name | F17B5.3 | ||||||||
| Molecular_name | F17B5.3a | ||||||||
| F17B5.3a.1 | |||||||||
| CE15867 | |||||||||
| F17B5.3b | |||||||||
| CE46515 | |||||||||
| F17B5.3b.1 | |||||||||
| Other_name | CELE_F17B5.3 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | clec-109 | ||||||||
| DB_info | Database | AceView | gene | 1N790 | |||||
| WormQTL | gene | WBGene00008907 | |||||||
| WormFlux | gene | WBGene00008907 | |||||||
| NDB | locus_tag | CELE_F17B5.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00008907|UniProtKB=O45375 | |||||||
| family | PTHR23124 | ||||||||
| NCBI | gene | 173183 | |||||||
| RefSeq | protein | NM_001265167.2 | |||||||
| NM_001265166.4 | |||||||||
| TREEFAM | TREEFAM_ID | TF315870 | |||||||
| TrEMBL | UniProtAcc | O45375 | |||||||
| G3MU52 | |||||||||
| UniProt_GCRP | UniProtAcc | O45375 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:49 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 09 Oct 2007 15:40:27 | WBPerson2970 | Name_change | CGC_name | clec-109 | ||||
| 3 | 24 Apr 2012 09:59:31 | WBPerson1983 | Event | Acquires_merge | WBGene00044721 | ||||
| Acquires_merge | WBGene00044721 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | clec | ||||||||
| Allele (43) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (42) | |||||||||
| Paralog (126) | |||||||||
| Structured_description | Concise_description | clec-109 encodes a C-type lectin (CTL); by homology, CLEC-109 is predicted to function as a calcium-dependent, carbohydrate binding protein. | Curator_confirmed | WBPerson1843 | |||||
| Date_last_updated | 23 Apr 2012 00:00:00 | ||||||||
| Automated_description | Is affected by several genes including rrf-3; lin-4; and lin-14 based on tiling array; microarray; and RNA-seq studies. Is affected by four chemicals including Zidovudine; allantoin; and Sirolimus based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: C-type lectin-like/link domain superfamily and C-type lectin fold. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F17B5.3a | |||||||
| F17B5.3b | |||||||||
| Corresponding_transcript | F17B5.3a.1 | ||||||||
| F17B5.3b.1 | |||||||||
| Associated_feature | WBsf220482 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00112620 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00044867 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00003404 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1028191 | ||||||||
| Expr1148828 | |||||||||
| Drives_construct | WBCnstr00032605 | ||||||||
| Construct_product | WBCnstr00032605 | ||||||||
| Microarray_results (22) | |||||||||
| Expression_cluster (34) | |||||||||
| Interaction (80) | |||||||||
| Map_info | Map | I | Position | 17.241 | Error | 0.004522 | |||
| Positive | Positive_clone | F17B5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
