WormBase Tree Display for Gene: WBGene00000675
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| WBGene00000675 | Evidence | Person_evidence | WBPerson345 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| WBPerson651 | |||||||||
| SMap | S_parent | Sequence | K02D7 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | col-101 | Person_evidence | WBPerson345 | |||||
| Sequence_name | K02D7.3 | ||||||||
| Molecular_name | K02D7.3a | ||||||||
| K02D7.3a.1 | |||||||||
| CE41676 | |||||||||
| K02D7.3b | |||||||||
| CE17996 | |||||||||
| K02D7.3b.1 | |||||||||
| Other_name | CELE_K02D7.3 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | col-101 | ||||||||
| DB_info | Database | AceView | gene | 4B78 | |||||
| WormQTL | gene | WBGene00000675 | |||||||
| WormFlux | gene | WBGene00000675 | |||||||
| NDB | locus_tag | CELE_K02D7.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000675|UniProtKB=O45105 | |||||||
| family | PTHR24637 | ||||||||
| NCBI | gene | 176854 | |||||||
| RefSeq | protein | NM_001307715.3 | |||||||
| NM_067504.8 | |||||||||
| TrEMBL | UniProtAcc | O45105 | |||||||
| U4PFF3 | |||||||||
| UniProt_GCRP | UniProtAcc | O45105 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | col | ||||||||
| Allele (41) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00033884 | ||||||||
| 00033885 | |||||||||
| 00033886 | |||||||||
| 00107669 | |||||||||
| Ortholog (26) | |||||||||
| Paralog (163) | |||||||||
| Structured_description | Concise_description | col-101 encodes a cuticle collagen; loss of col-101 via large-scale RNAi screens results in animals that are pale and slow growing. | Curator_confirmed | WBPerson1843 | |||||
| Date_last_updated | 29 Mar 2007 00:00:00 | ||||||||
| Automated_description | Predicted to be a structural constituent of cuticle. Predicted to be located in membrane. Predicted to be part of collagen trimer. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | K02D7.3a | |||||||
| K02D7.3b | |||||||||
| Corresponding_CDS_history | K02D7.3:wp183 | ||||||||
| Corresponding_transcript | K02D7.3a.1 | ||||||||
| K02D7.3b.1 | |||||||||
| Other_sequence (20) | |||||||||
| Associated_feature | WBsf651616 | ||||||||
| WBsf229673 | |||||||||
| Experimental_info | RNAi_result (16) | ||||||||
| Expr_pattern | Expr1018214 | ||||||||
| Expr1030400 | |||||||||
| Expr1153418 | |||||||||
| Expr2010300 | |||||||||
| Expr2028542 | |||||||||
| Drives_construct | WBCnstr00037378 | ||||||||
| Construct_product | WBCnstr00037378 | ||||||||
| Microarray_results (17) | |||||||||
| Expression_cluster (345) | |||||||||
| Interaction (89) | |||||||||
| Map_info | Map | IV | Position | -26.4968 | Error | 0.028187 | |||
| Positive | Positive_clone | K02D7 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00025192 | ||||||||
| WBPaper00032196 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00041771 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00059347 | |||||||||
| WBPaper00060970 | |||||||||
| WBPaper00065331 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
