WormBase Tree Display for Gene: WBGene00003574
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| WBGene00003574 | Evidence | Author_evidence | Schwartz EM | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | C13D9 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | ncx-9 | |||||||
| Sequence_name | C13D9.8 | ||||||||
| Molecular_name | C13D9.8 | ||||||||
| C13D9.8.1 | |||||||||
| CE52885 | |||||||||
| Other_name | CELE_C13D9.8 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | ncx-9 | ||||||||
| DB_info | Database | AceView | gene | 5F468 | |||||
| WormQTL | gene | WBGene00003574 | |||||||
| WormFlux | gene | WBGene00003574 | |||||||
| NDB | locus_tag | CELE_C13D9.8 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003574|UniProtKB=O16242 | |||||||
| family | PTHR12266 | ||||||||
| NCBI | gene | 182576 | |||||||
| RefSeq | protein | NM_071941.3 | |||||||
| SwissProt | UniProtAcc | O16242 | |||||||
| TREEFAM | TREEFAM_ID | TF323444 | |||||||
| UniProt_GCRP | UniProtAcc | O16242 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ncx | ||||||||
| Allele (162) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (20) | |||||||||
| Ortholog (39) | |||||||||
| Paralog | WBGene00003571 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00003572 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00003573 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00003575 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | ncx-9 encodes a putative Na[+]/Ca[2+] exchanger of uncertainstoichiometry and affinity, orthologous to human SLC24A6 and paralogousto NCX-6/-8 and NCX-10; NCX-9 may function intracellularly; NCX-9 has tandem Calx-alpha domains predicted to carry out ion transport; NCX-9has no obvious function in mass RNAi assays. | Paper_evidence | WBPaper00012774 | |||||
| WBPaper00028596 | |||||||||
| WBPaper00031156 | |||||||||
| WBPaper00031157 | |||||||||
| WBPaper00031158 | |||||||||
| WBPaper00031159 | |||||||||
| WBPaper00031160 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 07 Nov 2007 00:00:00 | ||||||||
| Automated_description | Enables calcium:sodium antiporter activity. Involved in calcium export from the mitochondrion and regulation of dorsal/ventral axon guidance. Located in mitochondrion. Expressed in head neurons; neurons; and seam cell. Is an ortholog of human SLC8B1 (solute carrier family 8 member B1). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C13D9.8 | |||||||
| Corresponding_CDS_history | C13D9.8:wp268 | ||||||||
| Corresponding_transcript | C13D9.8.1 | ||||||||
| Other_sequence | CR11256 | ||||||||
| Acan_isotig10592 | |||||||||
| CRC07216_1 | |||||||||
| Associated_feature | WBsf999913 | ||||||||
| WBsf1019576 | |||||||||
| WBsf233630 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00040443 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00078343 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00028845 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00010692 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr11163 | ||||||||
| Expr13280 | |||||||||
| Expr1012045 | |||||||||
| Expr1144510 | |||||||||
| Expr2013926 | |||||||||
| Expr2032165 | |||||||||
| Drives_construct | WBCnstr00018023 | ||||||||
| WBCnstr00036031 | |||||||||
| WBCnstr00039151 | |||||||||
| Construct_product | WBCnstr00036031 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (88) | |||||||||
| Interaction (63) | |||||||||
| Map_info | Map | V | Position | -3.6104 | Error | 0.001698 | |||
| Positive | Positive_clone | C13D9 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00047953 | |||||||||
| WBPaper00050783 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00062223 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
