WormBase Tree Display for Gene: WBGene00003571

WBGene00003571 Evidence: Author_evidence: Schwartz EM
  SMap: S_parent: Sequence: C07A9
  Identity: Version: 1
    Name: CGC_name: ncx-6
      Sequence_name: C07A9.4
      Molecular_name: C07A9.4
        C07A9.4.1
        CE33595
      Other_name: CELE_C07A9.4 Accession_evidence: NDB BX284603
      Public_name: ncx-6
    DB_info: Database: AceView gene 3K800
        WormQTL gene WBGene00003571
        WormFlux gene WBGene00003571
        NDB locus_tag CELE_C07A9.4
        Panther gene CAEEL|WormBase=WBGene00003571|UniProtKB=P34315
          family PTHR12266
        NCBI gene 182354
        RefSeq protein NM_066745.3
        SwissProt UniProtAcc P34315
        TREEFAM TREEFAM_ID TF323444
        UniProt_GCRP UniProtAcc P34315
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:32 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: ncx
    Allele (40)
    Strain: WBStrain00037682
    RNASeq_FPKM (74)
    GO_annotation (13)
    Ortholog (37)
    Paralog: WBGene00003573 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00003574 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00003575 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00003572 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
    Structured_description: Concise_description: ncx-6 encodes a putative Na[+]/Ca[2+] exchanger of uncertain stoichiometry and affinity, orthologous to human SLC24A6 and paralogous to NCX-7/-10; NCX-6 may function intracellularly; NCX-6 has tandem Calx-alpha domains predicted to carry out ion transport; NCX-6 has no obvious function in mass RNAi assays. Paper_evidence: WBPaper00012774
            WBPaper00028596
            WBPaper00031156
            WBPaper00031157
            WBPaper00031158
            WBPaper00031159
            WBPaper00031160
          Curator_confirmed: WBPerson567
          Date_last_updated: 07 Nov 2007 00:00:00
      Automated_description: Predicted to enable calcium:sodium antiporter activity. Predicted to be involved in intracellular calcium ion homeostasis and monoatomic cation transport. Predicted to be located in membrane. Expressed in ADLL and ADLR. Is an ortholog of human SLC8B1 (solute carrier family 8 member B1). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C07A9.4
    Corresponding_CDS_history: C07A9.4:wp56
      C07A9.4:wp98
    Corresponding_transcript: C07A9.4.1
  Experimental_info: RNAi_result: WBRNAi00010366 Inferred_automatically: RNAi_primary
      WBRNAi00039977 Inferred_automatically: RNAi_primary
      WBRNAi00028617 Inferred_automatically: RNAi_primary
      WBRNAi00006111 Inferred_automatically: RNAi_primary
      WBRNAi00006129 Inferred_automatically: RNAi_primary
      WBRNAi00039973 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr11160
      Expr1012189
      Expr1144055
      Expr2013923
    Drives_construct: WBCnstr00018020
      WBCnstr00036034
    Construct_product: WBCnstr00036034
    Microarray_results (17)
    Expression_cluster (140)
    Interaction: WBInteraction000240695
      WBInteraction000456314
  Map_info: Map: III Position: 0.912959 Error: 0.002315
    Positive: Positive_clone: C07A9 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00055090
    WBPaper00061590
    WBPaper00062223
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene