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WormBase Tree Display for Gene: WBGene00003571

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Name Class

WBGene00003571EvidenceAuthor_evidenceSchwartz EM
SMapS_parentSequenceC07A9
IdentityVersion1
NameCGC_namencx-6
Sequence_nameC07A9.4
Molecular_nameC07A9.4
C07A9.4.1
CE33595
Other_nameCELE_C07A9.4Accession_evidenceNDBBX284603
Public_namencx-6
DB_infoDatabaseAceViewgene3K800
WormQTLgeneWBGene00003571
WormFluxgeneWBGene00003571
NDBlocus_tagCELE_C07A9.4
PanthergeneCAEEL|WormBase=WBGene00003571|UniProtKB=P34315
familyPTHR12266
NCBIgene182354
RefSeqproteinNM_066745.3
SwissProtUniProtAccP34315
TREEFAMTREEFAM_IDTF323444
UniProt_GCRPUniProtAccP34315
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:32WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classncx
Allele (40)
StrainWBStrain00037682
RNASeq_FPKM (74)
GO_annotation (13)
Ortholog (37)
ParalogWBGene00003573Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00003574Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00003575Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00003572Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
Structured_descriptionConcise_descriptionncx-6 encodes a putative Na[+]/Ca[2+] exchanger of uncertain stoichiometry and affinity, orthologous to human SLC24A6 and paralogous to NCX-7/-10; NCX-6 may function intracellularly; NCX-6 has tandem Calx-alpha domains predicted to carry out ion transport; NCX-6 has no obvious function in mass RNAi assays.Paper_evidenceWBPaper00012774
WBPaper00028596
WBPaper00031156
WBPaper00031157
WBPaper00031158
WBPaper00031159
WBPaper00031160
Curator_confirmedWBPerson567
Date_last_updated07 Nov 2007 00:00:00
Automated_descriptionPredicted to enable calcium:sodium antiporter activity. Predicted to be involved in intracellular calcium ion homeostasis and monoatomic cation transport. Predicted to be located in membrane. Expressed in ADLL and ADLR. Is an ortholog of human SLC8B1 (solute carrier family 8 member B1).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSC07A9.4
Corresponding_CDS_historyC07A9.4:wp56
C07A9.4:wp98
Corresponding_transcriptC07A9.4.1
Experimental_infoRNAi_resultWBRNAi00010366Inferred_automaticallyRNAi_primary
WBRNAi00039977Inferred_automaticallyRNAi_primary
WBRNAi00028617Inferred_automaticallyRNAi_primary
WBRNAi00006111Inferred_automaticallyRNAi_primary
WBRNAi00006129Inferred_automaticallyRNAi_primary
WBRNAi00039973Inferred_automaticallyRNAi_primary
Expr_patternExpr11160
Expr1012189
Expr1144055
Expr2013923
Drives_constructWBCnstr00018020
WBCnstr00036034
Construct_productWBCnstr00036034
Microarray_results (17)
Expression_clusterWBPaper00033065:cyc-1(RNAi)_downregulated
WBPaper00037950:intestine_larva_enriched
WBPaper00037950:intestine_larva_SelectivelyEnriched
WBPaper00038438:D.coniospora_12hr_downregulated_RNAseq
WBPaper00038438:E.faecalis_24hr_upregulated_RNAseq
WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
WBPaper00038438:P.lumniescens_24hr_upregulated_RNAseq
WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
WBPaper00038438:S.marcescens_24hr_upregulated_RNAseq
WBPaper00042561:smg-2(RNAi)_downregulated
WBPaper00042561:smgl-1(RNAi)_downregulated
WBPaper00044005:DAF-16_downregulated
WBPaper00044316:CH3HgCl_7.5uM_downregulated
WBPaper00044736:flat_dev_expression
WBPaper00044760:germline_specific
WBPaper00045257:bar-1(ga80)_downregulated
WBPaper00045521:Gender_Neutral
WBPaper00047131:daf-2(e1370)_downregulated_N2-background
WBPaper00048971:daf-16(mgDf50)_upregulated_L1
WBPaper00048988:neuron_expressed
WBPaper00049368:daf-2(e1370)_downregulated
WBPaper00049377:MWCNT_upregulated
WBPaper00049736:daf-2(e1370)_downregulated_15deg-then-25deg(12hr)
WBPaper00049920:Glucose-Diet_downregulated_hyl-2(tm2031)
WBPaper00050096:P.aeruginosa_upregulated
WBPaper00050488:20C_vs_25C_regulated_mir-34(gk437)_adult
WBPaper00050488:20C_vs_25C_regulated_mir-34(OverExpression)_adult
WBPaper00050488:20C_vs_25C_regulated_N2_adult
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00051039:intestine_enriched
WBPaper00051404:alg-1(gk214)_downregulated
WBPaper00051558:aging_regulated
WBPaper00052884:emb-4(hc60)_downregulated
WBPaper00053295:lin-22(ot267)_downregulated
WBPaper00053302:zidovudine_72h_regulated
WBPaper00053388:dauer_regulated_Cluster5
WBPaper00053810:daf-2(e1370)_downregulated
WBPaper00055060:flr-1(RNAi)_upregulated
WBPaper00055354:Rapamycin-Metformin_downregulated
WBPaper00055354:Rapamycin-Rifampicin_downregulated
WBPaper00055354:Rifampicin-Allantoin_downregulated
WBPaper00055386:daf-2(e1370)_downregulated
WBPaper00055386:eat-2(ad465)_upregulated
WBPaper00055626:pry-1(mu38)_downregulated
WBPaper00055648:male-seminal-vesicle_expressed
WBPaper00055827:daf-2(e1370)_downregulated
WBPaper00055941:nuo-6(qm200);atfs-1(gk3094)_downregulated
WBPaper00056218:daf-16(mu86)_downregulated_Day7
WBPaper00056275:P.aeruginosa_upregulated
WBPaper00056275:P.aeruginosa_upregulated_pmk-1(km25)_dependent
WBPaper00056443:DietaryRestriction_downregulated
WBPaper00056443:sek-1(km4)_upregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
WBPaper00056550:ceh-60(ok1485)_upregulated_AdultDay4
WBPaper00057154:HeatShock_downregulated_mRNA
WBPaper00058598:mex-1(or286)_downregulated
WBPaper00058598:spn-4(tm291)_downregulated
WBPaper00058711:paraquat_downregulated
WBPaper00058711:skn-1(lax188)_upregulated
WBPaper00058711:wdr-5(ok1417)_downregulated
WBPaper00058948:PA14_downregulated
WBPaper00059117:B.subtilis_downregulated
WBPaper00059191:hsp-16.2p-LIN-29_upregulated
WBPaper00059664:srbc-48(ac23)_upregulated
WBPaper00059735:glucose_downregulated_lpin-1(RNAi)
WBPaper00059987:Wounding_upregulated
WBPaper00060399:pqm-1(ok485)_downregulated_CoCl2_6hr
WBPaper00060434:pH4.33_vs_pH6.33_downrgulated
WBPaper00060661:hypoxia_upregulated
WBPaper00060886:met-2(n4256)_upregulated
WBPaper00060909:atfs-1(cmh15)_downregulated
WBPaper00060911:prx-5(RNAi)_upregulated_mRNA
WBPaper00061007:HB101_upregulated
WBPaper00061007:HB115_upregulated
WBPaper00061007:M.braciatum_upregulated
WBPaper00061007:S.aquatilis_upregulated
WBPaper00061081:E.faecalis_upregulated_N2
WBPaper00061081:E.faecalis_upregulated_skpo-1(ok1640)
WBPaper00061341:28C_48h_downregulated
WBPaper00061405:S.aureus_upregulated_starvation
WBPaper00061439:unc-30(ok613)_downregulated
WBPaper00061527:F55G1.15_14159-ncx-6
WBPaper00061530:nhr-49(e2144)_downregulated
WBPaper00061590:CGP37157_upregulated
WBPaper00062156:jmjd-1.2(zr1010)_downregulated
WBPaper00062156:jmjd-5(zr1234)_updownregulated
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062193:hsf-1(RNAi)_downregulated
WBPaper00062193:skn-1(RNAi)_downregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062345:bortezomib_4h_downregulated_N2
WBPaper00062345:bortezomib_4h_downregulated_zip-1(jy13)
WBPaper00062354:H.zoospora_6h_regulated
WBPaper00062440:crh-1(n3315)_upregulated
WBPaper00062440:crh-1(syb385)_upregulated
WBPaper00062590:Aging_downregulated_neuron
WBPaper00064088:Day-1-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064088:Day-1-adult_vs_L4_upregulated_glp-1(e2141)
WBPaper00064632:daf-2(e1370)_downregulated_intestine
WBPaper00064728:cpl-1(W32AY35A)_upregulated
WBPaper00064933:bcf-1(ylf1)_downregulated_transcript
WBPaper00065086:JU1400_N.ferruginous_regulated
WBPaper00065096:Day10_vs_Day1_downregulated
WBPaper00065158:25C_vs_15C_downregulated_WholeAnimal
WBPaper00065392:Lb.plantarum_upregulated
WBPaper00065392:Lb.reuteri_upregulated
WBPaper00065734:unc-25(e156)_upregulated
WBPaper00065749:Heat-Shock_downregulated_endu-2(tm4977)
WBPaper00065749:Heat-Shock_downregulated_N2
WBPaper00065975:P-body_vs_WholeAnimal_depleted
WBPaper00065984:pals-17(syb3980)_downregulated
WBPaper00065993:glp-1(e2141)_upregulated
WBPaper00066110:Cisplatin_downregulated_diploid
WBPaper00066110:Doxorubicin_downregulated_diploid
WBPaper00025032:cluster_18
WBPaper00025141:N2_Expressed_Genes
WBPaper00025141:unc-4::GFP_Expressed_Genes
WBPaper00035479:daf-16(RNAi)_upregulated
WBPaper00037695:WC_5-day
WBPaper00038231:Cry5B_1.5-fold_upregulated
WBPaper00040184:hcf-1down_sir-2.1down_daf-2down
WBPaper00040603:tdp-1(lf)_up_vs_N2_FC_1.2
WBPaper00040963:Q100_down
WBPaper00040963:Q200_down
WBPaper00041002:HF_3d_2.0mM_Up
WBPaper00041606:CE_X.nematophila_regulated
WBPaper00041609:hpl-1_hpl-2_downregulated
WBPaper00041939:control_vs_EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
WBPaper00042258:DA1877_upregulated_GravidAdult
WBPaper00045673:colistin_upregulated
WBPaper00048989:eat-2(ad465)_rapamycin_upregulated
WBPaper00053688:E.faecalis_upregulated
WBPaper00055435:MUA-AuNP-0.5_upregulated
WBPaper00057098:SiO2-nanoparticles_upregulated
[cgc6390]:herm_soma-enriched
InteractionWBInteraction000240695
WBInteraction000456314
Map_infoMapIIIPosition0.912959Error0.002315
PositivePositive_cloneC07A9Inferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00038491
WBPaper00055090
WBPaper00061590
WBPaper00062223
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene