Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for Gene: WBGene00000616

expand all nodes | collapse all nodes | view schema

Name Class

WBGene00000616SMapS_parentSequenceC09G5
IdentityVersion1
NameCGC_namecol-39Person_evidenceWBPerson345
Sequence_nameC09G5.4
Molecular_nameC09G5.4
C09G5.4.1
CE01484
Other_nameCELE_C09G5.4Accession_evidenceNDBBX284602
Public_namecol-39
DB_infoDatabaseAceViewgene2K995
WormQTLgeneWBGene00000616
WormFluxgeneWBGene00000616
NDBlocus_tagCELE_C09G5.4
PanthergeneCAEEL|WormBase=WBGene00000616|UniProtKB=Q09455
familyPTHR24637
NCBIgene174651
RefSeqproteinNM_063908.7
SwissProtUniProtAccQ09455
TREEFAMTREEFAM_IDTF316783
UniProt_GCRPUniProtAccQ09455
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:21WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classcol
Allele (18)
Legacy_information[C.elegansII] NMK. Encodes collagen, col-8 family. [Kramer 1994; CH]
RNASeq_FPKM (74)
GO_annotation00053976
00053977
00053978
00107625
Ortholog (18)
ParalogWBGene00000596Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00000599Caenorhabditis elegansFrom_analysisTreeFam
WBGene00000666Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00000664Caenorhabditis elegansFrom_analysisTreeFam
WBGene00000677Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00000681Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00000700Caenorhabditis elegansFrom_analysisTreeFam
WBGene00000717Caenorhabditis elegansFrom_analysisTreeFam
WBGene00000718Caenorhabditis elegansFrom_analysisTreeFam
WBGene00000719Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00000632Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00000714Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00000716Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00000704Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00000735Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00000734Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00000720Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00000715Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00000721Caenorhabditis elegansFrom_analysisTreeFam
WBGene00000637Caenorhabditis elegansFrom_analysisTreeFam
WBGene00000676Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00000638Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00000656Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00000723Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00000749Caenorhabditis elegansFrom_analysisTreeFam
WBGene00000729Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00000722Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00000641Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00000639Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00000701Caenorhabditis elegansFrom_analysisTreeFam
WBGene00000628Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00000251Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000252Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000256Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000527Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000593Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000594Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000597Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000598Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000601Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000602Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000603Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000608Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000609Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000610Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000611Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000613Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000614Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000615Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000618Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000620Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000621Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000622Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000623Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000625Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000626Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000629Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000630Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000631Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000633Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000634Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000636Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000640Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000644Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000645Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000647Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000648Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000649Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000650Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000651Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000652Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000653Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000654Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000655Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000657Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000658Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000659Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000662Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000663Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000665Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000667Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000668Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000669Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000670Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000671Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000672Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000673Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000674Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000675Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000678Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000679Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000680Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000682Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000683Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000684Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000685Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000687Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000688Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000689Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000690Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000691Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000692Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000693Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000694Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000695Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000696Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000697Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000698Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000699Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000702Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000703Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000705Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000706Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000707Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000708Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000710Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000711Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000712Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000713Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000724Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000725Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000726Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000727Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000728Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000730Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000731Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000732Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000733Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000736Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000737Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000738Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000739Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000740Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000741Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000742Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000743Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000744Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000745Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000746Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000747Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000748Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000750Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000751Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000752Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000753Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000754Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000756Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000758Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000759Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00001064Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00001065Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00001066Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00001069Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00001070Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00001071Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00001072Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00001074Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00001075Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00001076Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00001263Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00002280Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00003057Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00003169Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00004300Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00004394Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00004397Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00004398Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00005017Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00005018Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00013489Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionConcise_descriptioncol-39 encodes a collagen that is individually dispensable for viability and gross morphology in mass RNAi screens; the amino- and carboxyl-terminal cysteine-rich regions of COL-39 are most closely related to those of COL-8, COL-19, and COL-35.Paper_evidenceWBPaper00000748
WBPaper00001918
WBPaper00005654
Curator_confirmedWBPerson567
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionPredicted to be a structural constituent of cuticle. Predicted to be part of collagen trimer.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSC09G5.4
Corresponding_transcriptC09G5.4.1
Other_sequence (17)
Associated_featureWBsf644627
WBsf222052
Experimental_infoRNAi_resultWBRNAi00010549Inferred_automaticallyRNAi_primary
WBRNAi00028737Inferred_automaticallyRNAi_primary
WBRNAi00040236Inferred_automaticallyRNAi_primary
WBRNAi00028739Inferred_automaticallyRNAi_primary
WBRNAi00040235Inferred_automaticallyRNAi_primary
WBRNAi00072831Inferred_automaticallyRNAi_primary
WBRNAi00072830Inferred_automaticallyRNAi_primary
Expr_patternExpr1024515
Expr1030361
Expr1144308
Expr2010391
Expr2028633
Drives_constructWBCnstr00037423
Construct_productWBCnstr00037423
Microarray_results (17)
Expression_cluster (286)
Interaction (77)
Map_infoMapIIPosition3.12389Error3.9e-05
PositivePositive_cloneC09G5Inferred_automaticallyFrom sequence, transcript, pseudogene data
GS#144A5
Pseudo_map_position
ReferenceWBPaper00001918
WBPaper00006387
WBPaper00012573
WBPaper00032165
WBPaper00038491
WBPaper00055090
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene