WormBase Tree Display for Gene: WBGene00000679
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| WBGene00000679 | Evidence | Person_evidence | WBPerson345 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| WBPerson651 | |||||||||
| SMap | S_parent | Sequence | F58F6 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | col-105 | Person_evidence | WBPerson345 | |||||
| Sequence_name | F58F6.2 | ||||||||
| Molecular_name | F58F6.2 | ||||||||
| F58F6.2.1 | |||||||||
| CE17137 | |||||||||
| Other_name | CELE_F58F6.2 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | col-105 | ||||||||
| DB_info | Database | AceView | gene | 4C122 | |||||
| WormQTL | gene | WBGene00000679 | |||||||
| WormFlux | gene | WBGene00000679 | |||||||
| NDB | locus_tag | CELE_F58F6.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000679|UniProtKB=O44173 | |||||||
| family | PTHR24023 | ||||||||
| NCBI | gene | 186529 | |||||||
| RefSeq | protein | NM_067670.2 | |||||||
| TrEMBL | UniProtAcc | O44173 | |||||||
| UniProt_GCRP | UniProtAcc | O44173 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | col | ||||||||
| Allele (38) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00032141 | ||||||||
| 00032142 | |||||||||
| 00032143 | |||||||||
| 00107673 | |||||||||
| Ortholog | WBGene00036558 | Caenorhabditis briggsae | From_analysis | OrthoMCL | |||||
| OMA | |||||||||
| WBGene00073637 | Caenorhabditis remanei | From_analysis | OMA | ||||||
| TreeFam | |||||||||
| Inparanoid_8 | |||||||||
| WBGene00123057 | Caenorhabditis japonica | From_analysis | Inparanoid_8 | ||||||
| Cang_2012_03_13_00050.g2621 | Caenorhabditis angaria | From_analysis | WormBase-Compara | ||||||
| Sp34_40009100 | Caenorhabditis inopinata | From_analysis | WormBase-Compara | ||||||
| chrIV_pilon.g9667 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| ZFIN:ZDB-GENE-030131-3430 | Danio rerio | From_analysis | EnsEMBL-Compara | ||||||
| Inparanoid | |||||||||
| ZFIN:ZDB-GENE-110411-119 | Danio rerio | From_analysis | EnsEMBL-Compara | ||||||
| Inparanoid | |||||||||
| Paralog (163) | |||||||||
| Structured_description | Automated_description | Predicted to be a structural constituent of cuticle. Predicted to be located in membrane. Predicted to be part of collagen trimer. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F58F6.2 | |||||||
| Corresponding_transcript | F58F6.2.1 | ||||||||
| Associated_feature | WBsf717132 | ||||||||
| WBsf718042 | |||||||||
| WBsf995410 | |||||||||
| WBsf995411 | |||||||||
| WBsf995412 | |||||||||
| WBsf1016708 | |||||||||
| WBsf1016709 | |||||||||
| WBsf229760 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00049021 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00033112 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1028312 | ||||||||
| Expr1152760 | |||||||||
| Expr2010303 | |||||||||
| Expr2028546 | |||||||||
| Drives_construct | WBCnstr00037374 | ||||||||
| Construct_product | WBCnstr00037374 | ||||||||
| Microarray_results (15) | |||||||||
| Expression_cluster (109) | |||||||||
| Interaction (31) | |||||||||
| Map_info | Map | IV | Position | -19.8744 | Error | 0.089892 | |||
| Positive | Positive_clone | F58F6 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
