WormBase Tree Display for Gene: WBGene00000602
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| WBGene00000602 | SMap | S_parent | Sequence | F15H10 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | col-13 | Person_evidence | WBPerson345 | |||||
| Sequence_name | F15H10.2 | ||||||||
| Molecular_name | F15H10.2 | ||||||||
| F15H10.2.1 | |||||||||
| CE05639 | |||||||||
| Other_name | CELE_F15H10.2 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | col-13 | ||||||||
| DB_info | Database | AceView | gene | 5K902 | |||||
| WormQTL | gene | WBGene00000602 | |||||||
| WormFlux | gene | WBGene00000602 | |||||||
| NDB | locus_tag | CELE_F15H10.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000602|UniProtKB=P20631 | |||||||
| family | PTHR24637 | ||||||||
| NCBI | gene | 179452 | |||||||
| RefSeq | protein | NM_073276.3 | |||||||
| SwissProt | UniProtAcc | P20631 | |||||||
| UniProt_GCRP | UniProtAcc | P20631 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | col | ||||||||
| Allele (13) | |||||||||
| Legacy_information | [C.elegansII] NMK. Transcript present at all stages. Encodes collagen, col-6 family.Linked to col-12. [Cox and Hirsh 1985] | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00039847 | ||||||||
| 00039848 | |||||||||
| 00039849 | |||||||||
| 00107615 | |||||||||
| Ortholog (44) | |||||||||
| Paralog (163) | |||||||||
| Structured_description | Concise_description | col-13 encodes a collagen which is expressed in all stages of development, like sqt-3 (col-1), col-3, col-10, col-11, col-12, and col-14; collagen genes with this expression profile may be specifically required to construct the L1 cuticle (and, perhaps, less specifically required for cuticles at other stages); the amino- and carboxyl-terminal cysteine-rich regions of COL-13 are most closely related to those of COL-6, COL-12, COL-14, COL-36, and COL-40. | Paper_evidence | WBPaper00000748 | |||||
| WBPaper00001918 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to be a structural constituent of cuticle. Predicted to be part of collagen trimer. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F15H10.2 | |||||||
| Corresponding_transcript | F15H10.2.1 | ||||||||
| Other_sequence (41) | |||||||||
| Associated_feature | WBsf234390 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00044760 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00030237 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00091328 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00013393 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00044759 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr757 | ||||||||
| Expr768 | |||||||||
| Expr2432 | |||||||||
| Expr1148725 | |||||||||
| Expr2010333 | |||||||||
| Drives_construct | WBCnstr00037434 | ||||||||
| Construct_product | WBCnstr00037434 | ||||||||
| Microarray_results (30) | |||||||||
| Expression_cluster (262) | |||||||||
| Interaction (104) | |||||||||
| Map_info | Map | V | Position | 2.54649 | |||||
| Positive | Positive_clone | F15H10 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (17) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
