| WBGene00000602 | SMap | S_parent | Sequence | F15H10 |
|---|
| Identity | Version | 1 |
| | Name | CGC_name | col-13 | Person_evidence | WBPerson345 |
| | | Sequence_name | F15H10.2 |
| | | Molecular_name | F15H10.2 |
| | | | F15H10.2.1 |
| | | | CE05639 |
| | | Other_name | CELE_F15H10.2 | Accession_evidence | NDB | BX284605 |
| | | Public_name | col-13 |
| | DB_info | Database | AceView | gene | 5K902 |
| | | | WormQTL | gene | WBGene00000602 |
| | | | WormFlux | gene | WBGene00000602 |
| | | | NDB | locus_tag | CELE_F15H10.2 |
| | | | Panther | gene | CAEEL|WormBase=WBGene00000602|UniProtKB=P20631 |
| | | | | family | PTHR24637 |
| | | | NCBI | gene | 179452 |
| | | | RefSeq | protein | NM_073276.3 |
| | | | SwissProt | UniProtAcc | P20631 |
| | | | UniProt_GCRP | UniProtAcc | P20631 |
| | Species | Caenorhabditis elegans |
| | History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace |
| | Status | Live |
| Gene_info | Biotype | SO:0001217 |
| | Gene_class | col |
| | Allele (13) |
| | Legacy_information | [C.elegansII] NMK. Transcript present at all stages. Encodes collagen, col-6 family.Linked to col-12. [Cox and Hirsh 1985] |
| | RNASeq_FPKM (74) |
| | GO_annotation | 00039847 |
| | | 00039848 |
| | | 00039849 |
| | | 00107615 |
| | Ortholog (44) |
| | Paralog (163) |
| | Structured_description | Concise_description | col-13 encodes a collagen which is expressed in all stages of development, like sqt-3 (col-1), col-3, col-10, col-11, col-12, and col-14; collagen genes with this expression profile may be specifically required to construct the L1 cuticle (and, perhaps, less specifically required for cuticles at other stages); the amino- and carboxyl-terminal cysteine-rich regions of COL-13 are most closely related to those of COL-6, COL-12, COL-14, COL-36, and COL-40. | Paper_evidence | WBPaper00000748 |
| | | | | | WBPaper00001918 |
| | | | | Curator_confirmed | WBPerson567 |
| | | | | Date_last_updated | 17 Jun 2004 00:00:00 |
| | | Automated_description | Predicted to be a structural constituent of cuticle. Predicted to be part of collagen trimer. | Paper_evidence | WBPaper00065943 |
| | | | | Curator_confirmed | WBPerson324 |
| | | | | | WBPerson37462 |
| | | | | Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase |
| | | | | Date_last_updated | 29 Nov 2023 00:00:00 |
| Molecular_info | Corresponding_CDS | F15H10.2 |
| | Corresponding_transcript | F15H10.2.1 |
| | Other_sequence (41) |
| | Associated_feature | WBsf234390 |
| Experimental_info | RNAi_result | WBRNAi00044760 | Inferred_automatically | RNAi_primary |
| | | WBRNAi00030237 | Inferred_automatically | RNAi_primary |
| | | WBRNAi00091328 | Inferred_automatically | RNAi_primary |
| | | WBRNAi00013393 | Inferred_automatically | RNAi_primary |
| | | WBRNAi00044759 | Inferred_automatically | RNAi_primary |
| | Expr_pattern | Expr757 |
| | | Expr768 |
| | | Expr2432 |
| | | Expr1148725 |
| | | Expr2010333 |
| | Drives_construct | WBCnstr00037434 |
| | Construct_product | WBCnstr00037434 |
| | Microarray_results (30) |
| | Expression_cluster | WBPaper00031040:TGF-beta_adult_upregulated |
| | | WBPaper00032031:DConiospora_downregulated_OligoArray_24h |
| | | WBPaper00032528:L3_enriched |
| | | WBPaper00033065:cyc-1(RNAi)_upregulated |
| | | WBPaper00033070:Rhine_downregulated |
| | | WBPaper00033444:BacteriaDiet_regulated |
| | | WBPaper00038118:stress_upregulated_N2 |
| | | WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray |
| | | WBPaper00040209:B.thuringiensis_downregulated_MY15 |
| | | WBPaper00040560:hpl-2_L3_downregulated |
| | | WBPaper00040990:PA14_upregulated |
| | | WBPaper00042477:rsr-2(RNAi)_upregulated_RNAseq |
| | | WBPaper00042561:smgl-1(RNAi)_upregulated |
| | | WBPaper00043945:MeHg_downregulated |
| | | WBPaper00044037:eat-2_regulated_nhr-62_dependent |
| | | WBPaper00044037:eat-2_upregulated |
| | | WBPaper00044260:nicotinc-acid_upregulated |
| | | WBPaper00044316:HgCl2_20uM_downregulated |
| | | WBPaper00044736:oscillating_dev_expression |
| | | WBPaper00044786:emr-1(gk119)_upregulated |
| | | WBPaper00045050:csr-1(hypomorph)_downregulated |
| | | WBPaper00045316:prg-1_downregulated_L3 |
| | | WBPaper00045401:N.parisii_40h_downregulated |
| | | WBPaper00045420:fertilization_downregulated_transcript |
| | | WBPaper00045521:Gender_Neutral |
| | | WBPaper00045774:clk-1_upregulated |
| | | WBPaper00045934:wrn-1(gk99)_upregulated |
| | | WBPaper00046024:sleep_upregulated_oscillating |
| | | WBPaper00046497:B.thuringiensis_0.1mix_downregulated_12h |
| | | WBPaper00046497:B.thuringiensis_0.5mix_downregulated_12h |
| | | WBPaper00046887:WNT-target |
| | | WBPaper00047131:daf-2(e1370)_upregulated_hel-1(gk148684)-background |
| | | WBPaper00047131:daf-2(e1370)_upregulated_N2-background |
| | | WBPaper00047132:glp-1(ts)-25C_upregulated |
| | | WBPaper00048971:daf-16(mgDf50)_downregulated_L1 |
| | | WBPaper00048988:daf-2(e1370)_upregulated_neuron |
| | | WBPaper00048988:neuron_expressed |
| | | WBPaper00049498:npr-1(ur89)_regulated_3 |
| | | WBPaper00049635:dop-1(vs100)_downregulated |
| | | WBPaper00049905:Age_variant_expression |
| | | WBPaper00049920:Glucose-Diet_upregulated_hyl-2(tm2031) |
| | | WBPaper00049920:Glucose-Diet_upregulated_N2 |
| | | WBPaper00049920:hyl-2(tm2031)_upregulated |
| | | WBPaper00049942:HeatShock_upregulated_hsf-1(+) |
| | | WBPaper00050080:rbr-2(tm3141)_downregulated |
| | | WBPaper00050370:dpy-21(e428)_L3_downregulated |
| | | WBPaper00050726:OsmoticStress_regulated_Food |
| | | WBPaper00050726:OsmoticStress_regulated_NoFood |
| | | WBPaper00050801:DAF-12_dauer_regulome |
| | | WBPaper00050801:DAF-16_dauer_regulome |
| | | WBPaper00050801:DPY-21_dauer_regulome |
| | | WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult |
| | | WBPaper00050990:GABAergic-neuron_expressed |
| | | WBPaper00050990:hypodermis_expressed |
| | | WBPaper00050990:NMDA-neuron_expressed |
| | | WBPaper00051265:F1_morc-1(tm6048)_upregulated |
| | | WBPaper00051265:F4_hrde-1(tm1200)_downregulated |
| | | WBPaper00051352:Long-Term-Association-Memory_downregulated |
| | | WBPaper00051371:Orsay-virus-infection_upregulated_rde-1(ne219) |
| | | WBPaper00051404:alg-1(gk214)_upregulated |
| | | WBPaper00051404:alg-2(ok304)_upregulated |
| | | WBPaper00051558:aging_regulated |
| | | WBPaper00052884:emb-4(hc60)_upregulated |
| | | WBPaper00053023:nrx-1(tm1961)_downregulated |
| | | WBPaper00053184:sma-2(rax5)_upregulated |
| | | WBPaper00053184:sma-4(rax3)_upregulated |
| | | WBPaper00053295:lin-22(ot269)_downregulated |
| | | WBPaper00053302:zidovudine_72h_regulated |
| | | WBPaper00053388:dauer_regulated_Cluster1 |
| | | WBPaper00053402:cco-1(RNAi)_downregulated |
| | | WBPaper00053657:N2_M.humicola-infection_12hr |
| | | WBPaper00054410:set-26(tm2467)_upregulated |
| | | WBPaper00054872:egl-9(sa307)_upregulated |
| | | WBPaper00055013:hmg-3(bar24)_downregulated |
| | | WBPaper00055049:S.gordonii_downregulated |
| | | WBPaper00055354:eat-2(ad1116)_upregulated |
| | | WBPaper00055354:Psora-Allantoin_downregulated |
| | | WBPaper00055354:Rapamycin-Metformin_downregulated |
| | | WBPaper00055354:Rapamycin-Psora-Allantoin_upregulated |
| | | WBPaper00055354:Rapamycin-Rifampicin_downregulated |
| | | WBPaper00055354:Rifampicin-Allantoin_downregulated |
| | | WBPaper00055482:Tunicamycin_downregulated |
| | | WBPaper00055626:pry-1(mu38)_downregulated |
| | | WBPaper00055827:pfd-6(gk493446)_downregulated |
| | | WBPaper00055897:heat-shock_upregulated |
| | | WBPaper00055944:C.butyricum_vs_OP50_downregulated |
| | | WBPaper00055969:electromagnetic-field_upregulated |
| | | WBPaper00055971:nhl-2(ok818)_20C_downregulated |
| | | WBPaper00055971:nhl-2(ok818)_25C_downregulated |
| | | WBPaper00056034:pals-22(jy3)_upregulated |
| | | WBPaper00056167:Cry5B_downregulated |
| | | WBPaper00056169:rrf-3(pk1426)_upregulated_L4 |
| | | WBPaper00056218:daf-16(mu86)_downregulated_Day7 |
| | | WBPaper00056284:ints-11(RNAi)_downregulated |
| | | WBPaper00056290:hsp-6(mg585)_downregulated |
| | | WBPaper00056326:zip-3(gk3164)_upregulated_P.aeruginosa-infected |
| | | WBPaper00056443:sek-1(km4)_upregulated |
| | | WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated |
| | | WBPaper00056586:kri-1(ok1251)_upregulated |
| | | WBPaper00056617:adr-1_upregulated_embryo_transcript |
| | | WBPaper00057041:spc-1(cas971)_upregulated |
| | | WBPaper00057041:unc-70(cas983)_upregulated |
| | | WBPaper00058711:wdr-5(ok1417)_upregulated |
| | | WBPaper00058725:sftb-1(cer6)_downregulated |
| | | WBPaper00058948:npr-8(ok1439)_downregulated_OP50 |
| | | WBPaper00058948:PA14_upregulated |
| | | WBPaper00058969:RIS_depleted |
| | | WBPaper00059117:B.subtilis_upregulated |
| | | WBPaper00059334:sacy-1(depletion)_regulated |
| | | WBPaper00059421:daf-1(m40);daf-3(mgDf90)_upregulated |
| | | WBPaper00059421:daf-1(m40)_upregulated |
| | | WBPaper00059426:SiO2-nanoparticles_upregulated |
| | | WBPaper00059605:mut-16(pk710)_upregulated |
| | | WBPaper00059728:5ug_cholesterol_upregulated |
| | | WBPaper00059728:20ug_cholesterol_upregulated |
| | | WBPaper00059739:hira-1(gk835598)_downregulated_L1 |
| | | WBPaper00059739:hira-1(gk835598)_upregulated_adult |
| | | WBPaper00059816:crh-1(n3315)_uprgulated |
| | | WBPaper00060273:isp-1(qm150)_upregulated |
| | | WBPaper00060273:vrk-1(RNAi)_downregulated |
| | | WBPaper00060358:B.thuringiensis_non-pathogen_regulated_elt-2(RNAi) |
| | | WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi) |
| | | WBPaper00060358:B.thuringiensis_pathogen_regulated_N2 |
| | | WBPaper00060399:pqm-1(ok485)_upregulated_CoCl2_6hr |
| | | WBPaper00060434:pH4.33_vs_pH6.33_uprgulated |
| | | WBPaper00060526:plp-1(ok2155)_upregulated |
| | | WBPaper00060683:hlh-11(ko1)_upregulated |
| | | WBPaper00060703:nas-38(ok3407)_downregulated |
| | | WBPaper00060764:swsn-1(os22ts)_upregulated |
| | | WBPaper00060811:L1_vs_adult_downregulated_neural |
| | | WBPaper00061007:HB101_upregulated |
| | | WBPaper00061007:S.aquatilis_upregulated |
| | | WBPaper00061040:eat-2(ad1116)_downregulated |
| | | WBPaper00061081:skpo-1(ok1640)_upregulated_OP50 |
| | | WBPaper00061390:daf-22(ok693)_ascarosides_downregulated |
| | | WBPaper00061424:Diet_MYb120_upregulated |
| | | WBPaper00061527:col-146-col-133 |
| | | WBPaper00061530:nhr-49(e2144)_upregulated |
| | | WBPaper00061919:oef-1(vr25)_regulated |
| | | WBPaper00061952:daf-18(nr2037)_downregulated |
| | | WBPaper00062159:hda-2(ok1479)_upregulated |
| | | WBPaper00062193:daf-16(RNAi)_upregulated |
| | | WBPaper00062193:skn-1(RNAi)_upregulated |
| | | WBPaper00062325:muscle_depleted_coding-RNA |
| | | WBPaper00062354:H.zoospora_6h_regulated |
| | | WBPaper00062440:crh-1(n3315)_upregulated |
| | | WBPaper00062440:crh-1(syb385)_upregulated |
| | | WBPaper00062446:nhr-8(hd117)_downregulated |
| | | WBPaper00062456:doxycycline_upregulated_CB4856_protein |
| | | WBPaper00062456:doxycycline_upregulated_CB4856_transcript |
| | | WBPaper00062456:doxycycline_upregulated_N2_transcript |
| | | WBPaper00062520:qui-1(db104)_downregulated |
| | | WBPaper00062585:hlh-26(ok1453)_upregulated_E.faecium |
| | | WBPaper00062590:Aging_downregulated_neuron |
| | | WBPaper00064088:Day-1-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141) |
| | | WBPaper00064088:Day-1-adult_vs_L4_downregulated_fem-3(q20) |
| | | WBPaper00064088:Day-1-adult_vs_L4_downregulated_glp-1(e2141) |
| | | WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141) |
| | | WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20) |
| | | WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141) |
| | | WBPaper00064229:B.thuringiensis-Cry5Ba_upregulated |
| | | WBPaper00064291:antimycin_upregulated |
| | | WBPaper00064494:postdauer_downregulated_WholeAnimal |
| | | WBPaper00064505:tamoxifen_downregulated |
| | | WBPaper00064509:static-magnetic-field_upregulated |
| | | WBPaper00064532:pals-25(icb98)_upregulated |
| | | WBPaper00064661:lpd-3(ok2138)_upregulated |
| | | WBPaper00064716:paraquat_upregulated |
| | | WBPaper00064727:daf-2(e1370)_upregulated |
| | | WBPaper00064933:bcf-1(ylf1)_downregulated_transcript |
| | | WBPaper00065029:cadmium_downregulated |
| | | WBPaper00065096:25C_vs_20C_downregulated |
| | | WBPaper00065096:Day10_vs_Day1_downregulated |
| | | WBPaper00065096:npr-8(ok1439)_downregulated_Day10_20C |
| | | WBPaper00065096:npr-8(ok1439)_upregulated_Day1_25C |
| | | WBPaper00065120:body-muscle-transcriptome |
| | | WBPaper00065158:25C_vs_15C_downregulated_WholeAnimal |
| | | WBPaper00065315:mating_upregulated_Day2-7 |
| | | WBPaper00065578:gcn-1(nc40)_upregulated |
| | | WBPaper00065581:hpk-1(pk1393)_upregulated |
| | | WBPaper00065746:eat-2(ad1113)_downregulated |
| | | WBPaper00065749:Heat-Shock_upregulated_endu-2(tm4977) |
| | | WBPaper00065749:Heat-Shock_upregulated_N2 |
| | | WBPaper00065841:30_1 |
| | | WBPaper00065841:82_0 |
| | | WBPaper00065926:pgph-2(overepxreesion)_upregulated_glucose |
| | | WBPaper00066038:mip-1(how5)_upregulated |
| | | WBPaper00066062:xrep-4(lax137)_upregulated |
| | | WBPaper00066093:E.coli-purE_upregulated |
| | | WBPaper00066110:Cisplatin_upregulated_diploid |
| | | WBPaper00066110:Doxorubicin_upregulated_diploid |
| | | WBPaper00066110:tetraploid_vs_diploid_upregulated |
| | | WBPaper00066232:ash-2(RNAi)_downregulated_WT |
| | | WBPaper00066232:hsf-1(RNAi)_upregulated_ash-2 |
| | | WBPaper00066232:hsf-1(RNAi)_upregulated_WT |
| | | cgc4386_cluster_1_3 |
| | | cgc4489_group_1 |
| | | WBPaper00005124:cholesterol_10-9M_regulated |
| | | WBPaper00005124:estrogen_10-5M_regulated |
| | | WBPaper00005124:progesterone_10-7M_regulated |
| | | WBPaper00024393:strongly_regulated_dauer_genes |
| | | WBPaper00025032:cluster_164 |
| | | WBPaper00025141:N2_Expressed_Genes |
| | | WBPaper00025141:unc-4::GFP_Expressed_Genes |
| | | WBPaper00026929:Resveratrol_regulated_daf-16 |
| | | WBPaper00026929:sir-2.1_overexpression_regulated |
| | | WBPaper00028789:PA14_vs_gacA_downregulated_8hr |
| | | WBPaper00028789:PA14_vs_OP50_downregulated_8hr |
| | | WBPaper00030985:Enterococcus_faecalis_downregulated |
| | | WBPaper00030985:Photorhabdus_luminescens_downregulated |
| | | WBPaper00031060:2-deoxy-D-glucose_upregulated |
| | | WBPaper00031532:Larva_Pan_Neuronal_Depleted |
| | | WBPaper00032062:age_regulated_genes |
| | | WBPaper00032948:FedUp |
| | | WBPaper00033101:spr-5_regulated |
| | | WBPaper00034757:down_by_oxidative_stress |
| | | WBPaper00035873:dpy-9_regulated |
| | | WBPaper00035873:dpy-10_regulated |
| | | WBPaper00035892:Y.pestis_regulated |
| | | WBPaper00036130:mir-243_up_regulated |
| | | WBPaper00036286:Pattern_C |
| | | WBPaper00036286:Pattern_G |
| | | WBPaper00036375:depleted_in_PVD_OLL |
| | | WBPaper00036383:ash-2_Day8_regulated |
| | | WBPaper00038172:aak-2overexpression_up_regulated |
| | | WBPaper00038172:crh-1null_up_regulated |
| | | WBPaper00038172:tax-6null_up_regulated |
| | | WBPaper00038427:lin-54_embryo_changed |
| | | WBPaper00040823:alg-1(gk214)_upregulated |
| | | WBPaper00040858:eQTL_age_regulated_aging |
| | | WBPaper00040858:eQTL_age_regulated_developing |
| | | WBPaper00040858:eQTL_regulated_aging |
| | | WBPaper00040858:eQTL_regulated_old |
| | | WBPaper00040876:mir-35_downregulated |
| | | WBPaper00040963:Q50_up |
| | | WBPaper00040963:Q200_up |
| | | WBPaper00040963:TA100_up |
| | | WBPaper00040963:TA200_up |
| | | WBPaper00040963:TA300_up |
| | | WBPaper00041002:HF_11d_2.0mM_Up |
| | | WBPaper00041002:HQ_3d_2.0mM_Down |
| | | WBPaper00041939:control_vs_EtBr-exposed_48h |
| | | WBPaper00041939:control_vs_UVC-EtBr-exposed_48h |
| | | WBPaper00041939:control_vs_UVC-EtBr-exposed_51h |
| | | WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h |
| | | WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h |
| | | WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h |
| | | WBPaper00042258:DA1877_upregulated_GravidAdult |
| | | WBPaper00042274:tbx-2(bx59)_upregulated |
| | | WBPaper00045374:Benzene_upregulated |
| | | WBPaper00045960:L1-L4-lethargus_upregulated |
| | | WBPaper00045960:L4-lethargus_upregulated |
| | | WBPaper00046548:dafachronic-acid_downregulated |
| | | WBPaper00047070:DAF-16-dependent_UV_response |
| | | WBPaper00048624:hlh-25(ok1710)_upregulated |
| | | WBPaper00048637:lin-35(n745)_starvation_downregulated |
| | | WBPaper00048989:eat-2(ad465)_downregulated_in-DMSO |
| | | WBPaper00048989:eat-2(ad465)_rapamycin_upregulated |
| | | WBPaper00053550:daf-19(m86)_downregulated_L1 |
| | | WBPaper00057098:SiO2-nanoparticles_downregulated |
| | | [cgc6390]:Cluster_C |
| | | [cgc6390]:male_sex-enriched |
| | Interaction (104) |
| Map_info | Map | V | Position | 2.54649 |
| | Positive | Positive_clone | F15H10 | Inferred_automatically | From sequence, transcript, pseudogene data |
| | Pseudo_map_position |
| Reference (17) |
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission |
| Method | Gene |
