WormBase Tree Display for Gene: WBGene00000593
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| WBGene00000593 | SMap | S_parent | Sequence | W01B6 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | col-2 | Person_evidence | WBPerson345 | |||||
| Sequence_name | W01B6.7 | ||||||||
| Molecular_name | W01B6.7 | ||||||||
| W01B6.7.1 | |||||||||
| CE03759 | |||||||||
| Other_name | CELE_W01B6.7 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | col-2 | ||||||||
| DB_info | Database | AceView | gene | 4K848 | |||||
| WormQTL | gene | WBGene00000593 | |||||||
| WormFlux | gene | WBGene00000593 | |||||||
| NDB | locus_tag | CELE_W01B6.7 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000593|UniProtKB=P17656 | |||||||
| family | PTHR24637 | ||||||||
| NCBI | gene | 177872 | |||||||
| RefSeq | protein | NM_069428.4 | |||||||
| SwissProt | UniProtAcc | P17656 | |||||||
| UniProt_GCRP | UniProtAcc | P17656 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | col | ||||||||
| Allele (22) | |||||||||
| Legacy_information | Transcript present in dauer larvae. | ||||||||
| [C.elegansII] NMK. Transcript abundant only in dauer larvae. Encodes 300 aa collagen, dpy-13 family (59%identical to SQT-3). [Kramer et al. 1982; Cox and Hirsh 1985] | |||||||||
| Strain | WBStrain00055316 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00039559 | ||||||||
| 00039560 | |||||||||
| 00039561 | |||||||||
| 00107608 | |||||||||
| Ortholog (13) | |||||||||
| Paralog (163) | |||||||||
| Structured_description | Concise_description | col-2 encodes a member of the collagen superfamily containing collagen triple helix repeats (20 copies); expression peaks during the molt that separates the L2 larval and dauer stages as the dauer cuticle is being formed, and mRNA is expressed at low levels in post-dauer L4 larvae and in adult animals. | Paper_evidence | WBPaper00000746 | |||||
| WBPaper00000748 | |||||||||
| Curator_confirmed | WBPerson48 | ||||||||
| Date_last_updated | 01 Sep 2004 00:00:00 | ||||||||
| Automated_description | Predicted to be a structural constituent of cuticle. Predicted to be part of collagen trimer. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | W01B6.7 | |||||||
| Corresponding_transcript | W01B6.7.1 | ||||||||
| Other_sequence (53) | |||||||||
| Associated_feature | WBsf230664 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00019454 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00054508 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00027595 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr610 | ||||||||
| Expr761 | |||||||||
| Expr1026718 | |||||||||
| Expr1030348 | |||||||||
| Expr1158055 | |||||||||
| Expr2010384 | |||||||||
| Expr2028626 | |||||||||
| Drives_construct | WBCnstr00037441 | ||||||||
| Construct_product | WBCnstr00037441 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (125) | |||||||||
| Interaction (54) | |||||||||
| Map_info | Map | IV | Position | 4.48372 | Error | 0.002237 | |||
| Positive | Positive_clone | DH#CG7 | |||||||
| W01B6 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||||
| Mapping_data | Multi_point | 1645 | |||||||
| 1649 | |||||||||
| 1653 | |||||||||
| 1654 | |||||||||
| 1882 | |||||||||
| 4260 | |||||||||
| Reference (43) | |||||||||
| Method | Gene |
