WormBase Tree Display for Gene: WBGene00000609
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| WBGene00000609 | SMap | S_parent | Sequence | F11G11 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | col-20 | Person_evidence | WBPerson345 | |||||
| Sequence_name | F11G11.11 | ||||||||
| Molecular_name | F11G11.11 | ||||||||
| F11G11.11.1 | |||||||||
| CE36533 | |||||||||
| Other_name | CELE_F11G11.11 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | col-20 | ||||||||
| DB_info | Database | AceView | gene | 2F160 | |||||
| WormQTL | gene | WBGene00000609 | |||||||
| WormFlux | gene | WBGene00000609 | |||||||
| NDB | locus_tag | CELE_F11G11.11 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000609|UniProtKB=P91249 | |||||||
| family | PTHR24637 | ||||||||
| NCBI | gene | 173840 | |||||||
| RefSeq | protein | NM_062478.10 | |||||||
| TrEMBL | UniProtAcc | P91249 | |||||||
| UniProt_GCRP | UniProtAcc | P91249 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | col | ||||||||
| Allele (20) | |||||||||
| Legacy_information | [C.elegansII] NMK. Linked to col-17. [Cox and Hirsh 1985] | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00050354 | ||||||||
| 00050355 | |||||||||
| 00050356 | |||||||||
| 00107618 | |||||||||
| Ortholog (28) | |||||||||
| Paralog (163) | |||||||||
| Structured_description | Concise_description | col-20 encodes a collagen; its expression pattern and mutant phenotypes are unknown. | Paper_evidence | WBPaper00000748 | |||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to be a structural constituent of cuticle. Predicted to be located in membrane. Predicted to be part of collagen trimer. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F11G11.11 | |||||||
| Corresponding_CDS_history | F11G11.11:wp121 | ||||||||
| Corresponding_transcript | F11G11.11.1 | ||||||||
| Other_sequence (59) | |||||||||
| Associated_feature | WBsf650020 | ||||||||
| WBsf987729 | |||||||||
| WBsf987730 | |||||||||
| WBsf1012146 | |||||||||
| WBsf222965 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00030836 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00103269 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00044408 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00022323 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1018905 | ||||||||
| Expr1030354 | |||||||||
| Expr1148354 | |||||||||
| Expr2010383 | |||||||||
| Expr2028625 | |||||||||
| Drives_construct | WBCnstr00037430 | ||||||||
| Construct_product | WBCnstr00037430 | ||||||||
| Microarray_results (16) | |||||||||
| Expression_cluster (265) | |||||||||
| Interaction (59) | |||||||||
| Map_info | Map | II | Position | -2.97535 | Error | 0.00121 | |||
| Positive | Positive_clone | F11G11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00000722 | ||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
