WormBase Tree Display for Gene: WBGene00000620
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| WBGene00000620 | SMap | S_parent | Sequence | ZC513 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | col-43 | Person_evidence | WBPerson345 | |||||
| Sequence_name | ZC513.8 | ||||||||
| Molecular_name | ZC513.8 | ||||||||
| ZC513.8.1 | |||||||||
| CE07615 | |||||||||
| Other_name | CELE_ZC513.8 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | col-43 | ||||||||
| DB_info | Database | AceView | gene | 5I530 | |||||
| WormQTL | gene | WBGene00000620 | |||||||
| WormFlux | gene | WBGene00000620 | |||||||
| NDB | locus_tag | CELE_ZC513.8 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000620|UniProtKB=G5ED38 | |||||||
| family | PTHR24637 | ||||||||
| NCBI | gene | 179187 | |||||||
| RefSeq | protein | NM_072673.7 | |||||||
| TrEMBL | UniProtAcc | G5ED38 | |||||||
| UniProt_GCRP | UniProtAcc | G5ED38 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | col | ||||||||
| Allele (25) | |||||||||
| Strain | WBStrain00055320 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00013181 | ||||||||
| 00013182 | |||||||||
| 00013183 | |||||||||
| 00107628 | |||||||||
| Ortholog (30) | |||||||||
| Paralog (163) | |||||||||
| Structured_description | Concise_description | col-43 encodes a collagen that is individually dispensable for viability and gross morphology in mass RNAi screens. | Paper_evidence | WBPaper00001918 | |||||
| WBPaper00005654 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to be a structural constituent of cuticle. Predicted to be located in membrane. Predicted to be part of collagen trimer. Expressed in hypodermis. Is an ortholog of human C1QTNF9 (C1q and TNF related 9); C1QTNF9B (C1q and TNF related 9B); and OTOL1 (otolin 1). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | ZC513.8 | |||||||
| Corresponding_transcript | ZC513.8.1 | ||||||||
| Other_sequence (101) | |||||||||
| Associated_feature | WBsf1000573 | ||||||||
| WBsf1019978 | |||||||||
| WBsf234021 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00021744 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00038094 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00058996 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr3261 | ||||||||
| Expr1026110 | |||||||||
| Expr1030364 | |||||||||
| Expr1162429 | |||||||||
| Expr2010396 | |||||||||
| Expr2028638 | |||||||||
| Drives_construct | WBCnstr00011264 | ||||||||
| WBCnstr00037421 | |||||||||
| Construct_product | WBCnstr00037421 | ||||||||
| Microarray_results (17) | |||||||||
| Expression_cluster (250) | |||||||||
| Interaction (64) | |||||||||
| Map_info | Map | V | Position | 1.00518 | Error | 0.000157 | |||
| Positive | Positive_clone | ZC513 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00011971 | ||||||||
| WBPaper00025069 | |||||||||
| WBPaper00025183 | |||||||||
| WBPaper00027067 | |||||||||
| WBPaper00037548 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
