WormBase Tree Display for Gene: WBGene00000700
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| WBGene00000700 | Evidence | Person_evidence | WBPerson345 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| WBPerson651 | |||||||||
| SMap | S_parent | Sequence | F54D1 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | col-126 | Person_evidence | WBPerson345 | |||||
| Sequence_name | F54D1.2 | ||||||||
| Molecular_name | F54D1.2 | ||||||||
| F54D1.2.1 | |||||||||
| CE05937 | |||||||||
| Other_name | CELE_F54D1.2 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | col-126 | ||||||||
| DB_info | Database | AceView | gene | 4M29 | |||||
| WormFlux | gene | WBGene00000700 | |||||||
| NDB | locus_tag | CELE_F54D1.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000700|UniProtKB=G5EFU8 | |||||||
| family | PTHR24637 | ||||||||
| NCBI | gene | 178034 | |||||||
| RefSeq | protein | NM_069714.2 | |||||||
| TREEFAM | TREEFAM_ID | TF316783 | |||||||
| TrEMBL | UniProtAcc | G5EFU8 | |||||||
| UniProt_GCRP | UniProtAcc | G5EFU8 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | col | ||||||||
| Allele | WBVar01500079 | ||||||||
| WBVar01498996 | |||||||||
| WBVar01499925 | |||||||||
| WBVar01499585 | |||||||||
| WBVar01499586 | |||||||||
| WBVar01500245 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00018857 | ||||||||
| 00018858 | |||||||||
| 00107692 | |||||||||
| Ortholog (54) | |||||||||
| Paralog (40) | |||||||||
| Structured_description | Automated_description | Predicted to be a structural constituent of cuticle. Predicted to be part of collagen trimer. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F54D1.2 | |||||||
| Corresponding_CDS_history | F54D1.2:wp196 | ||||||||
| F54D1.2:wp231 | |||||||||
| Corresponding_transcript | F54D1.2.1 | ||||||||
| Other_sequence (72) | |||||||||
| Associated_feature | WBsf229124 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00048279 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00015595 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00032772 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00048280 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1021644 | ||||||||
| Expr1152081 | |||||||||
| Drives_construct | WBCnstr00037357 | ||||||||
| Construct_product | WBCnstr00037357 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (116) | |||||||||
| SAGE_tag | SAGE:atcaagttcttgatgga | Strand | Sense | ||||||
| Unambiguously_mapped | |||||||||
| SAGE:atcaagttct | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| Interaction (70) | |||||||||
| Map_info | Map | IV | Position | 4.93363 | |||||
| Positive | Positive_clone | F54D1 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00025192 | ||||||||
| WBPaper00055090 | |||||||||
| WBPaper00059172 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
