WormBase Tree Display for Gene: WBGene00000700

WBGene00000700 Evidence: Person_evidence: WBPerson345
      WBPerson651
  SMap: S_parent: Sequence: F54D1
  Identity: Version: 1
    Name: CGC_name: col-126 Person_evidence: WBPerson345
      Sequence_name: F54D1.2
      Molecular_name: F54D1.2
        F54D1.2.1
        CE05937
      Other_name: CELE_F54D1.2 Accession_evidence: NDB BX284604
      Public_name: col-126
    DB_info: Database: AceView gene 4M29
        WormFlux gene WBGene00000700
        NDB locus_tag CELE_F54D1.2
        Panther gene CAEEL|WormBase=WBGene00000700|UniProtKB=G5EFU8
          family PTHR24637
        NCBI gene 178034
        RefSeq protein NM_069714.2
        TREEFAM TREEFAM_ID TF316783
        TrEMBL UniProtAcc G5EFU8
        UniProt_GCRP UniProtAcc G5EFU8
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:21 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: col
    Allele: WBVar01500079
      WBVar01498996
      WBVar01499925
      WBVar01499585
      WBVar01499586
      WBVar01500245
    RNASeq_FPKM (74)
    GO_annotation: 00018857
      00018858
      00107692
    Ortholog (54)
    Paralog (40)
    Structured_description: Automated_description: Predicted to be a structural constituent of cuticle. Predicted to be part of collagen trimer. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F54D1.2
    Corresponding_CDS_history: F54D1.2:wp196
      F54D1.2:wp231
    Corresponding_transcript: F54D1.2.1
    Other_sequence (72)
    Associated_feature: WBsf229124
  Experimental_info: RNAi_result: WBRNAi00048279 Inferred_automatically: RNAi_primary
      WBRNAi00015595 Inferred_automatically: RNAi_primary
      WBRNAi00032772 Inferred_automatically: RNAi_primary
      WBRNAi00048280 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1021644
      Expr1152081
    Drives_construct: WBCnstr00037357
    Construct_product: WBCnstr00037357
    Microarray_results (19)
    Expression_cluster: WBPaper00033070:Elbe_upregulated
      WBPaper00033070:Rhine_upregulated
      WBPaper00040285:H2S_12hr_downregulated
      WBPaper00040285:H2S_24hr_downregulated
      WBPaper00043945:MeHg_downregulated
      WBPaper00044786:emr-1(gk119)_upregulated
      WBPaper00045521:Gender_Neutral
      WBPaper00046012:tdp-1(ok803)_downregulated
      WBPaper00048971:daf-16(mgDf50)_downregulated_L1
      WBPaper00049018:ham-3(RNAi)_downregulated
      WBPaper00049495:starvation-refeeding_regulated
      WBPaper00049545:jmjd-3.1(+)_upregulated
      WBPaper00049545:rgef-1p-jmjd-1.2(+)_upregulated
      WBPaper00049942:HeatShock_upregulated_hsf-1(+)
      WBPaper00050109:rBmTX14_upregulated
      WBPaper00050743:elli-1(sam-3)_downregulated
      WBPaper00050990:hypodermis_enriched
      WBPaper00050990:hypodermis_expressed
      WBPaper00053020:sta-1(ok587)_downregulated
      WBPaper00053295:lin-22(ot269)_downregulated
      WBPaper00053402:cco-1(RNAi)_downregulated
      WBPaper00053599:female_vs_male_downregulated
      WBPaper00053771:down_by_skn-1(RNAi)_at_dpy-7(e88)
      WBPaper00053771:up_at_dpy-7(e88)
      WBPaper00054872:egl-9(sa307)_upregulated
      WBPaper00055013:hmg-3(bar24)_downregulated
      WBPaper00055049:S.gordonii_downregulated
      WBPaper00055354:Rapamycin-Rifampicin_downregulated
      WBPaper00055386:daf-2(e1370)_upregulated
      WBPaper00055386:eat-2(ad465)_upregulated
      WBPaper00055482:Tunicamycin_downregulated
      WBPaper00055827:pfd-6(gk493446)_downregulated
      WBPaper00055897:heat-shock_upregulated
      WBPaper00055944:C.butyricum_vs_OP50_downregulated
      WBPaper00055971:nhl-2(ok818)_20C_downregulated
      WBPaper00055971:nhl-2(ok818)_25C_downregulated
      WBPaper00056034:pals-22(jy3)_upregulated
      WBPaper00056167:Cry5B_downregulated
      WBPaper00057068:numr-1(RNAi)_upregulated
      WBPaper00059605:mut-16(pk710)_upregulated
      WBPaper00059739:hira-1(gk835598)_upregulated_adult
      WBPaper00060703:nas-38(ok3407)_downregulated
      WBPaper00061040:eat-2(ad1116)_downregulated
      WBPaper00061081:skpo-1(ok1640)_upregulated_OP50
      WBPaper00061527:172183_at-176110_at
      WBPaper00061527:R12E2.14_75-R12E2.15
      WBPaper00061613:human-alpha-Synuclein(A53T)_downregulated
      WBPaper00061613:human-amyloid-beta_alpha-Synuclein(A53T)_downregulated
      WBPaper00062193:daf-16(RNAi)_upregulated
      WBPaper00062193:skn-1(RNAi)_upregulated
      WBPaper00062197:mec-8_upregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062446:nhr-8(hd117)_downregulated
      WBPaper00062456:doxycycline_upregulated_N2_transcript
      WBPaper00062520:qui-1(db104)_downregulated
      WBPaper00062534:fat-P-80_downregulated_ech-6(RNAi)
      WBPaper00064505:tamoxifen_downregulated
      WBPaper00064509:static-magnetic-field_upregulated
      WBPaper00064532:pals-25(icb98)_upregulated
      WBPaper00064661:lpd-3(ok2138)_upregulated
      WBPaper00064716:paraquat_upregulated
      WBPaper00064933:bcf-1(ylf1)_downregulated_transcript
      WBPaper00065005:sams-3(RNAi)_upregulated
      WBPaper00065074:glna(-)_downregulated
      WBPaper00065120:body-muscle-transcriptome
      WBPaper00065746:eat-2(ad1113)_downregulated
      WBPaper00066038:mip-1(how5)_upregulated
      WBPaper00066093:E.coli-purE_upregulated
      WBPaper00066110:Cisplatin_upregulated_diploid
      WBPaper00066110:Doxorubicin_upregulated_diploid
      WBPaper00066110:tetraploid_vs_diploid_upregulated
      WBPaper00066232:hsf-1(RNAi)_upregulated_ash-2
      WBPaper00066232:hsf-1(RNAi)_upregulated_WT
      cgc4489_group_3
      WBPaper00024393:strongly_regulated_dauer_genes
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00032062:age_regulated_genes
      WBPaper00035873:dpy-9_regulated
      WBPaper00035873:dpy-10_regulated
      WBPaper00035873:osm-8_regulated
      WBPaper00036123:Cadmium_regulated
      WBPaper00036130:mir-243_up_regulated
      WBPaper00038172:aak-2overexpression_up_regulated
      WBPaper00038172:crh-1null_up_regulated
      WBPaper00038172:tax-6null_up_regulated
      WBPaper00039866:ClassComp_daf-19_downregulated
      WBPaper00039866:SAM_daf-19_downregulated
      WBPaper00040603:tdp-1(lf)_down_vs_N2_FC_1.2
      WBPaper00040963:Q100_up
      WBPaper00040963:Q200_up
      WBPaper00040963:TA100_up
      WBPaper00040963:TA200_up
      WBPaper00040963:TA300_up
      WBPaper00041002:HQ_3d_2.0mM_Down
      WBPaper00041609:hpl-1_hpl-2_upregulated
      WBPaper00041939:control_vs_EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
      WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h
      WBPaper00042331:a-SWCNTs_downregulated
      WBPaper00045263:isp-1(qm150)_downregulated
      WBPaper00045263:nuo-6(qm200)_downregulated
      WBPaper00045960:L1-L4-lethargus_upregulated
      WBPaper00045960:L4-lethargus_upregulated
      WBPaper00046548:dafachronic-acid_downregulated
      WBPaper00046853:AOBr_M.aeruginosa-batch-culture_downregulated
      WBPaper00048989:eat-2(ad465)_downregulated_in-DMSO
      WBPaper00048989:eat-2(ad465)_rapamycin_upregulated
      WBPaper00050515:nipi-3(fr4)_upregulated
      WBPaper00050650:mBmkTX_downregulated
      WBPaper00053550:daf-19(m86)_downregulated_3-fold-embryo
      WBPaper00053550:daf-19(m86)_downregulated_L1
      WBPaper00056330:mrps-5(RNAi)_upregulated
      WBPaper00057098:SiO2-nanoparticles_downregulated
      [cgc6390]:Cluster_C
    SAGE_tag: SAGE:atcaagttcttgatgga Strand: Sense
        Unambiguously_mapped
      SAGE:atcaagttct Strand: Sense
        Unambiguously_mapped
    Interaction (70)
  Map_info: Map: IV Position: 4.93363
    Positive: Positive_clone: F54D1 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00025192
    WBPaper00055090
    WBPaper00059172
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene