WormBase Tree Display for Gene: WBGene00000631
expand all nodes | collapse all nodes | view schema
| WBGene00000631 | Evidence | Person_evidence | WBPerson345 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| WBPerson651 | |||||||||
| SMap | S_parent | Sequence | F33D11 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | col-54 | Person_evidence | WBPerson345 | |||||
| Sequence_name | F33D11.3 | ||||||||
| Molecular_name | F33D11.3 | ||||||||
| F33D11.3.1 | |||||||||
| CE09893 | |||||||||
| Other_name | CELE_F33D11.3 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | col-54 | ||||||||
| DB_info | Database | AceView | gene | 1G421 | |||||
| WormQTL | gene | WBGene00000631 | |||||||
| WormFlux | gene | WBGene00000631 | |||||||
| NDB | locus_tag | CELE_F33D11.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000631|UniProtKB=O44774 | |||||||
| family | PTHR24637 | ||||||||
| NCBI | gene | 185226 | |||||||
| RefSeq | protein | NM_059293.5 | |||||||
| TREEFAM | TREEFAM_ID | TF319073 | |||||||
| TrEMBL | UniProtAcc | O44774 | |||||||
| UniProt_GCRP | UniProtAcc | O44774 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | col | ||||||||
| Allele (21) | |||||||||
| Strain | WBStrain00055291 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00033392 | ||||||||
| 00033393 | |||||||||
| 00033394 | |||||||||
| 00033395 | |||||||||
| 00107635 | |||||||||
| Ortholog (26) | |||||||||
| Paralog (161) | |||||||||
| Structured_description | Automated_description | Predicted to be a structural constituent of cuticle. Involved in defense response to Gram-negative bacterium. Predicted to be located in membrane. Predicted to be part of collagen trimer. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F33D11.3 | |||||||
| Corresponding_transcript | F33D11.3.1 | ||||||||
| Other_sequence | MHC00617_1 | ||||||||
| JI479963.1 | |||||||||
| CR08292 | |||||||||
| CBC07449_1 | |||||||||
| CRC10269_1 | |||||||||
| MHC09985_1 | |||||||||
| Tcol_isotig16111 | |||||||||
| EX537632.1 | |||||||||
| Associated_feature | WBsf217716 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00003571 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00091326 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00092233 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00031713 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00046194 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr13629 | ||||||||
| Expr1027968 | |||||||||
| Expr1030373 | |||||||||
| Expr1150082 | |||||||||
| Expr2010406 | |||||||||
| Expr2028648 | |||||||||
| Drives_construct | WBCnstr00037413 | ||||||||
| WBCnstr00039889 | |||||||||
| Construct_product | WBCnstr00037413 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (239) | |||||||||
| Interaction (172) | |||||||||
| Map_info | Map | I | Position | 0.470444 | Error | 0.000208 | |||
| Positive | Positive_clone | F33D11 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
