WormBase Tree Display for Gene: WBGene00000610

WBGene00000610 SMap: S_parent: Sequence: F36A4
  Identity: Version: 1
    Name: CGC_name: col-33 Person_evidence: WBPerson345
      Sequence_name: F36A4.6
      Molecular_name: F36A4.6
        F36A4.6.1
        CE34548
      Other_name: CELE_F36A4.6 Accession_evidence: NDB BX284604
      Public_name: col-33
    DB_info: Database: AceView gene 4F29
        WormQTL gene WBGene00000610
        WormFlux gene WBGene00000610
        NDB locus_tag CELE_F36A4.6
        Panther gene CAEEL|WormBase=WBGene00000610|UniProtKB=Q20091
          family PTHR24637
        NCBI gene 177191
        RefSeq protein NM_068123.5
        TrEMBL UniProtAcc Q20091
        UniProt_GCRP UniProtAcc Q20091
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:21 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: col
    Allele (34)
    Legacy_information: [C.elegansII] NMK. Encodes collagen. [von Mende et al. 1988]col-34IV0.01NMK. Encodes collagen, adjacent and closely related to collagen gene dpy-13. [von Mende et al. 1988; Bird 1992; CH]
    RNASeq_FPKM (74)
    GO_annotation: 00067140
      00067141
      00067142
      00107619
    Ortholog (29)
    Paralog (163)
    Structured_description: Concise_description: col-33 encodes a predicted cuticular collagen; by homology, col-33 is predicted to play a role in cuticle biosynthesis and regulation of body size and morphogenesis; however, as loss of col-33 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of COL-33 in C. elegans development and/or behavior is not yet known. Paper_evidence: WBPaper00001101
            WBPaper00004651
            WBPaper00005654
          Curator_confirmed: WBPerson1843
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Predicted to be a structural constituent of cuticle. Predicted to be located in membrane. Predicted to be part of collagen trimer. Is an ortholog of human COL21A1 (collagen type XXI alpha 1 chain). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: DOID:9975 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:17025)
  Molecular_info: Corresponding_CDS: F36A4.6
    Corresponding_CDS_history: F36A4.6:wp102
    Corresponding_transcript: F36A4.6.1
    Other_sequence (66)
    Associated_feature: WBsf645912
      WBsf996227
      WBsf996228
      WBsf1017215
      WBsf228174
  Experimental_info: RNAi_result: WBRNAi00014398 Inferred_automatically: RNAi_primary
      WBRNAi00046458 Inferred_automatically: RNAi_primary
      WBRNAi00007359 Inferred_automatically: RNAi_primary
      WBRNAi00031836 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1014774
      Expr1030355
      Expr1150327
      Expr2010385
      Expr2028627
    Drives_construct: WBCnstr00037429
    Construct_product: WBCnstr00037429
    Microarray_results (16)
    Expression_cluster (174)
    Interaction (127)
  Map_info: Map: IV Position: 0.028672 Error: 0.017095
    Positive: Positive_clone: C16A2
        F36A4 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00001101
    WBPaper00016567
    WBPaper00021073
    WBPaper00025192
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene