WormBase Tree Display for Gene: WBGene00000683

WBGene00000683 Evidence: Person_evidence: WBPerson345
      WBPerson651
  SMap: S_parent: Sequence: Y38C1BA
  Identity: Version: 1
    Name: CGC_name: col-109 Person_evidence: WBPerson345
      Sequence_name: Y38C1BA.3
      Molecular_name: Y38C1BA.3
        Y38C1BA.3.1
        CE21569
      Other_name: CELE_Y38C1BA.3 Accession_evidence: NDB BX284604
      Public_name: col-109
    DB_info: Database: AceView gene 4C582
        WormQTL gene WBGene00000683
        WormFlux gene WBGene00000683
        NDB locus_tag CELE_Y38C1BA.3
        Panther gene CAEEL|WormBase=WBGene00000683|UniProtKB=Q9N527
          family PTHR24637
        NCBI gene 176988
        RefSeq protein NM_067737.6
        TrEMBL UniProtAcc Q9N527
        UniProt_GCRP UniProtAcc Q9N527
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:21 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: col
    Allele (74)
    Strain: WBStrain00055301
    RNASeq_FPKM (74)
    GO_annotation: 00095035
      00095036
      00095037
      00095038
      00105795
      00107677
    Ortholog (30)
    Paralog (163)
    Structured_description: Concise_description: col-109 encodes a cuticular collagen; loss of col-109 via large-scale RNAi screens results in no obvious defects. Paper_evidence: WBPaper00027067
          Curator_confirmed: WBPerson1843
          Date_last_updated: 27 Mar 2007 00:00:00
      Automated_description: Predicted to be a structural constituent of cuticle. Involved in IRE1-mediated unfolded protein response. Predicted to be located in membrane. Predicted to be part of collagen trimer. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y38C1BA.3
    Corresponding_transcript: Y38C1BA.3.1
    Other_sequence (61)
    Associated_feature: WBsf651655
      WBsf995543
      WBsf995544
      WBsf1016793
      WBsf1016794
      WBsf229784
      WBsf229785
      WBsf229786
  Experimental_info: RNAi_result: WBRNAi00056003 Inferred_automatically: RNAi_primary
      WBRNAi00070728 Inferred_automatically: RNAi_primary
      WBRNAi00001065 Inferred_automatically: RNAi_primary
      WBRNAi00070729 Inferred_automatically: RNAi_primary
      WBRNAi00020266 Inferred_automatically: RNAi_primary
      WBRNAi00036835 Inferred_automatically: RNAi_primary
      WBRNAi00020260 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1019082
      Expr1030407
      Expr1159520
      Expr2010306
      Expr2028550
    Microarray_results (21)
    Expression_cluster (337)
    Interaction (23)
  Map_info: Map: IV Position: -15.7597 Error: 0.0722
    Positive: Positive_clone: Y38C1BA Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00027067
    WBPaper00060839
    WBPaper00062388
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene