WormBase Tree Display for Gene: WBGene00000683
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WBGene00000683 | Evidence | Person_evidence | WBPerson345 | ||||||
---|---|---|---|---|---|---|---|---|---|
WBPerson651 | |||||||||
SMap | S_parent | Sequence | Y38C1BA | ||||||
Identity | Version | 1 | |||||||
Name | CGC_name | col-109 | Person_evidence | WBPerson345 | |||||
Sequence_name | Y38C1BA.3 | ||||||||
Molecular_name | Y38C1BA.3 | ||||||||
Y38C1BA.3.1 | |||||||||
CE21569 | |||||||||
Other_name | CELE_Y38C1BA.3 | Accession_evidence | NDB | BX284604 | |||||
Public_name | col-109 | ||||||||
DB_info | Database | AceView | gene | 4C582 | |||||
WormQTL | gene | WBGene00000683 | |||||||
WormFlux | gene | WBGene00000683 | |||||||
NDB | locus_tag | CELE_Y38C1BA.3 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00000683|UniProtKB=Q9N527 | |||||||
family | PTHR24637 | ||||||||
NCBI | gene | 176988 | |||||||
RefSeq | protein | NM_067737.6 | |||||||
TrEMBL | UniProtAcc | Q9N527 | |||||||
UniProt_GCRP | UniProtAcc | Q9N527 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | col | ||||||||
Allele (74) | |||||||||
Strain | WBStrain00055301 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00095035 | ||||||||
00095036 | |||||||||
00095037 | |||||||||
00095038 | |||||||||
00105795 | |||||||||
00107677 | |||||||||
Ortholog (30) | |||||||||
Paralog (163) | |||||||||
Structured_description | Concise_description | col-109 encodes a cuticular collagen; loss of col-109 via large-scale RNAi screens results in no obvious defects. | Paper_evidence | WBPaper00027067 | |||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 27 Mar 2007 00:00:00 | ||||||||
Automated_description | Predicted to be a structural constituent of cuticle. Involved in IRE1-mediated unfolded protein response. Predicted to be located in membrane. Predicted to be part of collagen trimer. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | Y38C1BA.3 | |||||||
Corresponding_transcript | Y38C1BA.3.1 | ||||||||
Other_sequence (61) | |||||||||
Associated_feature | WBsf651655 | ||||||||
WBsf995543 | |||||||||
WBsf995544 | |||||||||
WBsf1016793 | |||||||||
WBsf1016794 | |||||||||
WBsf229784 | |||||||||
WBsf229785 | |||||||||
WBsf229786 | |||||||||
Experimental_info | RNAi_result | WBRNAi00056003 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00070728 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00001065 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00070729 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00020266 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00036835 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00020260 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1019082 | ||||||||
Expr1030407 | |||||||||
Expr1159520 | |||||||||
Expr2010306 | |||||||||
Expr2028550 | |||||||||
Microarray_results (21) | |||||||||
Expression_cluster (337) | |||||||||
Interaction | WBInteraction000007970 | ||||||||
WBInteraction000127328 | |||||||||
WBInteraction000133203 | |||||||||
WBInteraction000134309 | |||||||||
WBInteraction000147111 | |||||||||
WBInteraction000148272 | |||||||||
WBInteraction000151803 | |||||||||
WBInteraction000152565 | |||||||||
WBInteraction000161388 | |||||||||
WBInteraction000174646 | |||||||||
WBInteraction000196180 | |||||||||
WBInteraction000198969 | |||||||||
WBInteraction000298586 | |||||||||
WBInteraction000360880 | |||||||||
WBInteraction000378917 | |||||||||
WBInteraction000383751 | |||||||||
WBInteraction000467104 | |||||||||
WBInteraction000468961 | |||||||||
WBInteraction000468962 | |||||||||
WBInteraction000468963 | |||||||||
WBInteraction000469001 | |||||||||
WBInteraction000474831 | |||||||||
WBInteraction000582284 | |||||||||
Map_info | Map | IV | Position | -15.7597 | Error | 0.0722 | |||
Positive | Positive_clone | Y38C1BA | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Pseudo_map_position | |||||||||
Reference | WBPaper00027067 | ||||||||
WBPaper00060839 | |||||||||
WBPaper00062388 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |