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WormBase Tree Display for Gene: WBGene00000683

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Name Class

WBGene00000683EvidencePerson_evidenceWBPerson345
WBPerson651
SMapS_parentSequenceY38C1BA
IdentityVersion1
NameCGC_namecol-109Person_evidenceWBPerson345
Sequence_nameY38C1BA.3
Molecular_nameY38C1BA.3
Y38C1BA.3.1
CE21569
Other_nameCELE_Y38C1BA.3Accession_evidenceNDBBX284604
Public_namecol-109
DB_infoDatabaseAceViewgene4C582
WormQTLgeneWBGene00000683
WormFluxgeneWBGene00000683
NDBlocus_tagCELE_Y38C1BA.3
PanthergeneCAEEL|WormBase=WBGene00000683|UniProtKB=Q9N527
familyPTHR24637
NCBIgene176988
RefSeqproteinNM_067737.6
TrEMBLUniProtAccQ9N527
UniProt_GCRPUniProtAccQ9N527
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:21WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classcol
Allele (74)
StrainWBStrain00055301
RNASeq_FPKM (74)
GO_annotation00095035
00095036
00095037
00095038
00105795
00107677
Ortholog (30)
ParalogWBGene00000617Caenorhabditis elegansFrom_analysisTreeFam
WBGene00000660Caenorhabditis elegansFrom_analysisTreeFam
WBGene00000251Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000252Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000256Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000527Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000593Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000594Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000596Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000597Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000598Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000601Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000602Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000603Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000608Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000609Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000610Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000611Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000613Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000614Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000615Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000616Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000618Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000620Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000621Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000622Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000623Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000625Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000626Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000628Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000629Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000630Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000631Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000632Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000633Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000634Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000636Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000638Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000639Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000640Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000641Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000644Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000645Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000647Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000648Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000649Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000650Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000651Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000652Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000653Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000654Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000655Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000656Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000657Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000658Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000659Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000662Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000663Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000665Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000666Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000667Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000668Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000669Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000670Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000671Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000672Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000673Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000674Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000675Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000676Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000677Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000678Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000679Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000680Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000681Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000682Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000684Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000685Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000687Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000688Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000689Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000690Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000691Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000692Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000693Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000694Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000695Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000696Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000697Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000698Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000699Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000702Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000703Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000704Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000705Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000706Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000707Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000708Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000710Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000711Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000712Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000713Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000714Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000715Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000716Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000719Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000720Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000722Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000723Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000724Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000725Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000726Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000727Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000728Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000729Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000730Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000731Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000732Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000733Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000734Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000735Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000736Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000737Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000738Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000739Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000740Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000741Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000742Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000743Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000744Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000745Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000746Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000747Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000748Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000750Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000751Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000752Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000753Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000754Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000756Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000758Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000759Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00001064Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00001065Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00001066Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00001069Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00001070Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00001071Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00001072Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00001074Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00001075Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00001076Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00001263Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00002280Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00003057Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00003169Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00004300Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00004394Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00004397Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00004398Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00005017Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00005018Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00013489Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionConcise_descriptioncol-109 encodes a cuticular collagen; loss of col-109 via large-scale RNAi screens results in no obvious defects.Paper_evidenceWBPaper00027067
Curator_confirmedWBPerson1843
Date_last_updated27 Mar 2007 00:00:00
Automated_descriptionPredicted to be a structural constituent of cuticle. Involved in IRE1-mediated unfolded protein response. Predicted to be located in membrane. Predicted to be part of collagen trimer.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSY38C1BA.3
Corresponding_transcriptY38C1BA.3.1
Other_sequence (61)
Associated_featureWBsf651655
WBsf995543
WBsf995544
WBsf1016793
WBsf1016794
WBsf229784
WBsf229785
WBsf229786
Experimental_infoRNAi_resultWBRNAi00056003Inferred_automaticallyRNAi_primary
WBRNAi00070728Inferred_automaticallyRNAi_primary
WBRNAi00001065Inferred_automaticallyRNAi_primary
WBRNAi00070729Inferred_automaticallyRNAi_primary
WBRNAi00020266Inferred_automaticallyRNAi_primary
WBRNAi00036835Inferred_automaticallyRNAi_primary
WBRNAi00020260Inferred_automaticallyRNAi_primary
Expr_patternExpr1019082
Expr1030407
Expr1159520
Expr2010306
Expr2028550
Microarray_results (21)
Expression_cluster (337)
Interaction (23)
Map_infoMapIVPosition-15.7597Error0.0722
PositivePositive_cloneY38C1BAInferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00027067
WBPaper00060839
WBPaper00062388
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene