WormBase Tree Display for Gene: WBGene00000616
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WBGene00000616 | SMap | S_parent | Sequence | C09G5 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | col-39 | Person_evidence | WBPerson345 | |||||
Sequence_name | C09G5.4 | ||||||||
Molecular_name | C09G5.4 | ||||||||
C09G5.4.1 | |||||||||
CE01484 | |||||||||
Other_name | CELE_C09G5.4 | Accession_evidence | NDB | BX284602 | |||||
Public_name | col-39 | ||||||||
DB_info | Database | AceView | gene | 2K995 | |||||
WormQTL | gene | WBGene00000616 | |||||||
WormFlux | gene | WBGene00000616 | |||||||
NDB | locus_tag | CELE_C09G5.4 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00000616|UniProtKB=Q09455 | |||||||
family | PTHR24637 | ||||||||
NCBI | gene | 174651 | |||||||
RefSeq | protein | NM_063908.7 | |||||||
SwissProt | UniProtAcc | Q09455 | |||||||
TREEFAM | TREEFAM_ID | TF316783 | |||||||
UniProt_GCRP | UniProtAcc | Q09455 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | col | ||||||||
Allele (18) | |||||||||
Legacy_information | [C.elegansII] NMK. Encodes collagen, col-8 family. [Kramer 1994; CH] | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00053976 | ||||||||
00053977 | |||||||||
00053978 | |||||||||
00107625 | |||||||||
Ortholog (18) | |||||||||
Paralog (170) | |||||||||
Structured_description | Concise_description | col-39 encodes a collagen that is individually dispensable for viability and gross morphology in mass RNAi screens; the amino- and carboxyl-terminal cysteine-rich regions of COL-39 are most closely related to those of COL-8, COL-19, and COL-35. | Paper_evidence | WBPaper00000748 | |||||
WBPaper00001918 | |||||||||
WBPaper00005654 | |||||||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Predicted to be a structural constituent of cuticle. Predicted to be part of collagen trimer. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | C09G5.4 | |||||||
Corresponding_transcript | C09G5.4.1 | ||||||||
Other_sequence (17) | |||||||||
Associated_feature | WBsf644627 | ||||||||
WBsf222052 | |||||||||
Experimental_info | RNAi_result | WBRNAi00010549 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00028737 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00040236 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00028739 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00040235 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00072831 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00072830 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1024515 | ||||||||
Expr1030361 | |||||||||
Expr1144308 | |||||||||
Expr2010391 | |||||||||
Expr2028633 | |||||||||
Drives_construct | WBCnstr00037423 | ||||||||
Construct_product | WBCnstr00037423 | ||||||||
Microarray_results (17) | |||||||||
Expression_cluster (286) | |||||||||
Interaction (77) | |||||||||
Map_info | Map | II | Position | 3.12389 | Error | 3.9e-05 | |||
Positive | Positive_clone | C09G5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
GS#144A5 | |||||||||
Pseudo_map_position | |||||||||
Reference | WBPaper00001918 | ||||||||
WBPaper00006387 | |||||||||
WBPaper00012573 | |||||||||
WBPaper00032165 | |||||||||
WBPaper00038491 | |||||||||
WBPaper00055090 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |