WormBase Tree Display for Gene: WBGene00000617
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| WBGene00000617 | Evidence | Person_evidence | WBPerson345 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| WBPerson651 | |||||||||
| SMap | S_parent | Sequence | T13B5 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | col-40 | Person_evidence | WBPerson345 | |||||
| Sequence_name | T13B5.4 | ||||||||
| Molecular_name | T13B5.4 | ||||||||
| T13B5.4.1 | |||||||||
| CE45752 | |||||||||
| Other_name | CELE_T13B5.4 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | col-40 | ||||||||
| DB_info | Database | AceView | gene | 2B396 | |||||
| WormQTL | gene | WBGene00000617 | |||||||
| WormFlux | gene | WBGene00000617 | |||||||
| NDB | locus_tag | CELE_T13B5.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000617|UniProtKB=P34804 | |||||||
| family | PTHR24637 | ||||||||
| NCBI | gene | 173495 | |||||||
| RefSeq | protein | NM_061512.5 | |||||||
| SwissProt | UniProtAcc | P34804 | |||||||
| UniProt_GCRP | UniProtAcc | P34804 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | col | ||||||||
| Allele (49) | |||||||||
| Legacy_information | [C.elegansII] NMK. Encodes 292 aa collagen, col-6 family. Transcript present L1, L2-dauer, not L2. [Levy and Kramer 1993] | ||||||||
| Strain | WBStrain00055290 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00044553 | ||||||||
| 00044554 | |||||||||
| 00044555 | |||||||||
| 00044556 | |||||||||
| 00044557 | |||||||||
| 00044558 | |||||||||
| 00107626 | |||||||||
| Ortholog (32) | |||||||||
| Paralog (66) | |||||||||
| Structured_description | Concise_description | col-40 encodes a cuticle collagen protein that belongs to the col-6 cuticle collagen family; col-40 transcript is present in L1 larvae and at the L2d-dauer molt. | Paper_evidence | WBPaper00001905 | |||||
| WBPaper00001918 | |||||||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to be a structural constituent of cuticle. Predicted to be part of collagen trimer. Expressed in hypodermis. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T13B5.4 | |||||||
| Corresponding_CDS_history | T13B5.4:wp223 | ||||||||
| Corresponding_transcript | T13B5.4.1 | ||||||||
| Other_sequence (16) | |||||||||
| Associated_feature | WBsf986574 | ||||||||
| WBsf1011484 | |||||||||
| WBsf222665 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00018662 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00053246 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr620 | ||||||||
| Expr14471 | |||||||||
| Expr1024690 | |||||||||
| Expr1030362 | |||||||||
| Expr1156830 | |||||||||
| Expr2010393 | |||||||||
| Expr2028635 | |||||||||
| Drives_construct | WBCnstr00040896 | ||||||||
| Microarray_results (14) | |||||||||
| Expression_cluster (91) | |||||||||
| Interaction (96) | |||||||||
| Map_info | Map | II | Position | -15.5684 | |||||
| Positive | Positive_clone | T13B5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00001835 | ||||||||
| WBPaper00001905 | |||||||||
| WBPaper00001918 | |||||||||
| WBPaper00001927 | |||||||||
| WBPaper00025192 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00056939 | |||||||||
| WBPaper00066030 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
