WormBase Tree Display for Gene: WBGene00000601
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| WBGene00000601 | SMap | S_parent | Sequence | F15H10 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | col-12 | Person_evidence | WBPerson345 | |||||
| Sequence_name | F15H10.1 | ||||||||
| Molecular_name | F15H10.1 | ||||||||
| F15H10.1.1 | |||||||||
| CE05638 | |||||||||
| F15H10.1.2 | |||||||||
| F15H10.1.3 | |||||||||
| Other_name | CELE_F15H10.1 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | col-12 | ||||||||
| DB_info | Database | AceView | gene | 5K904 | |||||
| WormQTL | gene | WBGene00000601 | |||||||
| WormFlux | gene | WBGene00000601 | |||||||
| NDB | locus_tag | CELE_F15H10.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000601|UniProtKB=P20630 | |||||||
| family | PTHR24637 | ||||||||
| NCBI | gene | 179453 | |||||||
| RefSeq | protein | NM_073277.6 | |||||||
| SwissProt | UniProtAcc | P20630 | |||||||
| UniProt_GCRP | UniProtAcc | P20630 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | col | ||||||||
| Allele (19) | |||||||||
| Legacy_information | [C.elegansII] NMK. Transcripts detected late in each larval stage, at lethargus. Encodes collagen, col-6 family. Linked to col-13. [Cox and Hirsh 1985; IA] | ||||||||
| Strain | WBStrain00008605 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00039844 | ||||||||
| 00039845 | |||||||||
| 00039846 | |||||||||
| 00107614 | |||||||||
| Ortholog (44) | |||||||||
| Paralog (161) | |||||||||
| Structured_description | Concise_description | col-12 encodes a member of the collagen superfamily containing collagen triple helix repeats (20 copies); expressed throughout development but expression peaks after each larval molt when new cuticle is being secreted and deposited, and after the L4 to adult larval molt. | Paper_evidence | WBPaper00000748 | |||||
| WBPaper00001247 | |||||||||
| WBPaper00002512 | |||||||||
| Curator_confirmed | WBPerson48 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to be a structural constituent of cuticle. Predicted to be part of collagen trimer. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F15H10.1 | |||||||
| Corresponding_transcript | F15H10.1.1 | ||||||||
| F15H10.1.2 | |||||||||
| F15H10.1.3 | |||||||||
| Other_sequence (77) | |||||||||
| Associated_feature | WBsf652990 | ||||||||
| WBsf1001109 | |||||||||
| WBsf1001110 | |||||||||
| WBsf234391 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00030236 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00044760 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00091328 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00013393 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00044759 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr611 | ||||||||
| Expr612 | |||||||||
| Expr756 | |||||||||
| Expr767 | |||||||||
| Expr2431 | |||||||||
| Expr12253 | |||||||||
| Expr1018167 | |||||||||
| Expr1148722 | |||||||||
| Expr2010325 | |||||||||
| Expr2028569 | |||||||||
| Drives_construct (41) | |||||||||
| Construct_product | WBCnstr00012448 | ||||||||
| WBCnstr00037435 | |||||||||
| Microarray_results | SMD_F15H10.1 | ||||||||
| 172878_x_at | |||||||||
| 172879_x_at | |||||||||
| 194205_x_at | |||||||||
| A_12_P149985 | |||||||||
| Aff_F15H10.1 | |||||||||
| GPL3518_CE05638 | |||||||||
| GPL9450_F15H10.1 | |||||||||
| cea2.p.158073 | |||||||||
| Expression_cluster (309) | |||||||||
| Interaction (105) | |||||||||
| Map_info | Map | V | Position | 2.54658 | Error | 0.000295 | |||
| Positive | Positive_clone | CH#COL12 | |||||||
| F15H10 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||||
| Pseudo_map_position | |||||||||
| Reference (37) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
