WormBase Tree Display for Gene: WBGene00000685
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| WBGene00000685 | Evidence | Person_evidence | WBPerson345 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| WBPerson651 | |||||||||
| SMap | S_parent | Sequence | F29B9 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | col-111 | Person_evidence | WBPerson345 | |||||
| Sequence_name | F29B9.9 | ||||||||
| Molecular_name | F29B9.9a | ||||||||
| F29B9.9a.1 | |||||||||
| CE34831 | |||||||||
| F29B9.9b | |||||||||
| CE48577 | |||||||||
| F29B9.9b.1 | |||||||||
| Other_name | CELE_F29B9.9 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | col-111 | ||||||||
| DB_info | Database | AceView | gene | 4F420 | |||||
| WormQTL | gene | WBGene00000685 | |||||||
| WormFlux | gene | WBGene00000685 | |||||||
| NDB | locus_tag | CELE_F29B9.9 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000685|UniProtKB=Q9GYI3 | |||||||
| family | PTHR24637 | ||||||||
| NCBI | gene | 177230 | |||||||
| RefSeq | protein | NM_001392302.1 | |||||||
| NM_068206.7 | |||||||||
| TrEMBL | UniProtAcc | Q9GYI3 | |||||||
| U4PM21 | |||||||||
| UniProt_GCRP | UniProtAcc | Q9GYI3 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | col | ||||||||
| Allele (34) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00092708 | ||||||||
| 00092709 | |||||||||
| 00092710 | |||||||||
| 00107679 | |||||||||
| Ortholog (19) | |||||||||
| Paralog (161) | |||||||||
| Structured_description | Automated_description | Predicted to be a structural constituent of cuticle. Predicted to be located in membrane. Predicted to be part of collagen trimer. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F29B9.9a | |||||||
| F29B9.9b | |||||||||
| Corresponding_CDS_history | F29B9.9:wp105 | ||||||||
| Corresponding_transcript | F29B9.9a.1 | ||||||||
| F29B9.9b.1 | |||||||||
| Other_sequence | CBC05564_1 | ||||||||
| EH362745.1 | |||||||||
| Dviv_isotig25238 | |||||||||
| OOC00168_1 | |||||||||
| PPC14428_1 | |||||||||
| NBC02827_1 | |||||||||
| CJC10439_1 | |||||||||
| BM174615.1 | |||||||||
| Associated_feature | WBsf651758 | ||||||||
| WBsf651759 | |||||||||
| WBsf667633 | |||||||||
| WBsf667898 | |||||||||
| WBsf229992 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00014098 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00045906 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00000931 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00031566 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1017753 | ||||||||
| Expr1030409 | |||||||||
| Expr1149809 | |||||||||
| Expr2010309 | |||||||||
| Expr2028553 | |||||||||
| Drives_construct | WBCnstr00037370 | ||||||||
| Construct_product | WBCnstr00037370 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (237) | |||||||||
| Interaction (153) | |||||||||
| Map_info | Map | IV | Position | 0.582629 | Error | 0.008993 | |||
| Positive | Positive_clone | F29B9 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00032165 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
