WormBase Tree Display for Gene: WBGene00000596
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| WBGene00000596 | SMap | S_parent | Sequence | C15A11 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | col-7 | Person_evidence | WBPerson345 | |||||
| Sequence_name | C15A11.5 | ||||||||
| Molecular_name | C15A11.5 | ||||||||
| C15A11.5.1 | |||||||||
| CE08173 | |||||||||
| Other_name | col7 | Accession_evidence | EMBL | M25478 | |||||
| CELE_C15A11.5 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | col-7 | ||||||||
| DB_info | Database | AceView | gene | 1H979 | |||||
| WormQTL | gene | WBGene00000596 | |||||||
| WormFlux | gene | WBGene00000596 | |||||||
| NDB | locus_tag | CELE_C15A11.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000596|UniProtKB=P18832 | |||||||
| family | PTHR24637 | ||||||||
| NCBI | gene | 172494 | |||||||
| RefSeq | protein | NM_059689.8 | |||||||
| SwissProt | UniProtAcc | P18832 | |||||||
| TREEFAM | TREEFAM_ID | TF316783 | |||||||
| UniProt_GCRP | UniProtAcc | P18832 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | col | ||||||||
| Allele (12) | |||||||||
| Legacy_information | [C.elegansII] NMK. Transcript present in dauer, adult;not detected in egg or L4. [Cox and Hirsh 1985; Liu et al. 1995; VT] | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00039609 | ||||||||
| 00039610 | |||||||||
| 00039611 | |||||||||
| 00107610 | |||||||||
| Ortholog (38) | |||||||||
| Paralog (170) | |||||||||
| Structured_description | Concise_description | col-7 encodes a member of the collagen superfamily containing collagen triple helix repeats (20 copies); expressed during the L2-to-dauer molt and the L4-to-adult molt. | Paper_evidence | WBPaper00000748 | |||||
| WBPaper00002222 | |||||||||
| Curator_confirmed | WBPerson48 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to be a structural constituent of cuticle. Predicted to be part of collagen trimer. Expressed in seam cell. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C15A11.5 | |||||||
| Corresponding_transcript | C15A11.5.1 | ||||||||
| Other_sequence | AW308621.1 | ||||||||
| EW743722.1 | |||||||||
| EX543803.1 | |||||||||
| AI436840.1 | |||||||||
| BG467601.1 | |||||||||
| MH05176 | |||||||||
| AI130090.1 | |||||||||
| NAC00384_1 | |||||||||
| EX542981.1 | |||||||||
| CK854727.1 | |||||||||
| Associated_feature | WBsf218004 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00040576 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00040577 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00002953 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00115373 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00002952 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr526 | ||||||||
| Expr764 | |||||||||
| Expr1011528 | |||||||||
| Expr1144630 | |||||||||
| Drives_construct | WBCnstr00012422 | ||||||||
| WBCnstr00037439 | |||||||||
| Construct_product | WBCnstr00012422 | ||||||||
| WBCnstr00037439 | |||||||||
| Microarray_results (28) | |||||||||
| Expression_cluster (219) | |||||||||
| Interaction (105) | |||||||||
| Map_info | Map | I | Position | 2.06616 | |||||
| Positive | Positive_clone | C15A11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| COL7 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (26) | |||||||||
| Remark | C15A11.6 is an adjacent unnamed collagen,according to Jim Kramer] email from JAH 0109 | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
