WormBase Tree Display for Gene: WBGene00000680
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| WBGene00000680 | Evidence | Person_evidence | WBPerson345 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| WBPerson651 | |||||||||
| SMap | S_parent | Sequence | Y77E11A | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | col-106 | Person_evidence | WBPerson345 | |||||
| Sequence_name | Y77E11A.15 | ||||||||
| Molecular_name | Y77E11A.15 | ||||||||
| Y77E11A.15.1 | |||||||||
| CE26306 | |||||||||
| Other_name | CELE_Y77E11A.15 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | col-106 | ||||||||
| DB_info | Database | AceView | gene | 4C224 | |||||
| WormQTL | gene | WBGene00000680 | |||||||
| WormFlux | gene | WBGene00000680 | |||||||
| NDB | locus_tag | CELE_Y77E11A.15 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000680|UniProtKB=Q8MXT6 | |||||||
| family | PTHR24637 | ||||||||
| NCBI | gene | 176955 | |||||||
| RefSeq | protein | NM_171268.7 | |||||||
| TREEFAM | TREEFAM_ID | TF319043 | |||||||
| TrEMBL | UniProtAcc | Q8MXT6 | |||||||
| UniProt_GCRP | UniProtAcc | Q8MXT6 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | col | ||||||||
| Allele (25) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00084710 | ||||||||
| 00084711 | |||||||||
| 00107674 | |||||||||
| Ortholog (26) | |||||||||
| Paralog (161) | |||||||||
| Structured_description | Concise_description | col-106 encodes a predicted cuticular collagen. | Curator_confirmed | WBPerson1843 | |||||
| Date_last_updated | 16 Aug 2011 00:00:00 | ||||||||
| Automated_description | Predicted to be a structural constituent of cuticle. Predicted to be part of collagen trimer. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y77E11A.15 | |||||||
| Corresponding_transcript | Y77E11A.15.1 | ||||||||
| Other_sequence (11) | |||||||||
| Associated_feature | WBsf229768 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00021488 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00021485 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00000952 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00058512 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00033387 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1017135 | ||||||||
| Expr1030404 | |||||||||
| Expr1161920 | |||||||||
| Expr2028547 | |||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (251) | |||||||||
| Interaction | WBInteraction000029863 | ||||||||
| WBInteraction000513249 | |||||||||
| WBInteraction000552018 | |||||||||
| WBInteraction000559921 | |||||||||
| WBInteraction000582912 | |||||||||
| WBInteraction000585782 | |||||||||
| Map_info | Map | IV | Position | -18.6769 | Error | 0.092775 | |||
| Positive | Positive_clone | Y77E11A | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| WBPaper00062518 | |||||||||
| WBPaper00065331 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
