WormBase Tree Display for Gene: WBGene00000613
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| WBGene00000613 | SMap | S_parent | Sequence | C27H5 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | col-36 | Person_evidence | WBPerson345 | |||||
| Sequence_name | C27H5.5 | ||||||||
| Molecular_name | C27H5.5 | ||||||||
| C27H5.5.1 | |||||||||
| CE06893 | |||||||||
| Other_name | CELE_C27H5.5 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | col-36 | ||||||||
| DB_info | Database | AceView | gene | 2H458 | |||||
| WormQTL | gene | WBGene00000613 | |||||||
| WormFlux | gene | WBGene00000613 | |||||||
| NDB | locus_tag | CELE_C27H5.5 | |||||||
| NCBI | gene | 174178 | |||||||
| RefSeq | protein | NM_063086.6 | |||||||
| SwissProt | UniProtAcc | P34803 | |||||||
| UniProt_GCRP | UniProtAcc | P34803 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | col | ||||||||
| Allele (27) | |||||||||
| Legacy_information | [C.elegansII] NMK. Encodes 307 aa collagen, col-6 family. Transcript present L1, L1-L2, L2-dauer, not eggs, late larvae, adults. C15G2. [Levy and Kramer 1993] | ||||||||
| Strain | WBStrain00055321 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00044550 | ||||||||
| 00044551 | |||||||||
| 00044552 | |||||||||
| 00107622 | |||||||||
| Ortholog (41) | |||||||||
| Paralog (163) | |||||||||
| Structured_description | Concise_description | col-36 encodes a collagen protein; expressed during the L1 to L2 and L2 to dauer larval stage molts. | Paper_evidence | WBPaper00001905 | |||||
| Curator_confirmed | WBPerson48 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to be a structural constituent of cuticle. Predicted to be part of collagen trimer. Is an ortholog of human COL21A1 (collagen type XXI alpha 1 chain). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:9975 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:17025) | ||||
| Molecular_info | Corresponding_CDS | C27H5.5 | |||||||
| Corresponding_CDS_history | C27H5.5:wp236 | ||||||||
| C27H5.5a:wp274 | |||||||||
| C27H5.5b:wp274 | |||||||||
| Corresponding_transcript | C27H5.5.1 | ||||||||
| Other_sequence (54) | |||||||||
| Associated_feature | WBsf223303 | ||||||||
| WBsf223304 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00027584 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00041376 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00011277 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00041378 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr619 | ||||||||
| Expr1013374 | |||||||||
| Expr1030358 | |||||||||
| Expr1145410 | |||||||||
| Expr2010388 | |||||||||
| Expr2028630 | |||||||||
| Drives_construct | WBCnstr00037426 | ||||||||
| Construct_product | WBCnstr00037426 | ||||||||
| Microarray_results (17) | |||||||||
| Expression_cluster (111) | |||||||||
| Interaction (41) | |||||||||
| Map_info | Map | II | Position | 0.496541 | Error | 0.000211 | |||
| Positive | Positive_clone | C27H5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00001835 | ||||||||
| WBPaper00001905 | |||||||||
| WBPaper00001918 | |||||||||
| WBPaper00001927 | |||||||||
| WBPaper00006387 | |||||||||
| WBPaper00015440 | |||||||||
| WBPaper00029087 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
