WormBase Tree Display for Gene: WBGene00000613

WBGene00000613 SMap: S_parent: Sequence: C27H5
  Identity: Version: 1
    Name: CGC_name: col-36 Person_evidence: WBPerson345
      Sequence_name: C27H5.5
      Molecular_name: C27H5.5
        C27H5.5.1
        CE06893
      Other_name: CELE_C27H5.5 Accession_evidence: NDB BX284602
      Public_name: col-36
    DB_info: Database: AceView gene 2H458
        WormQTL gene WBGene00000613
        WormFlux gene WBGene00000613
        NDB locus_tag CELE_C27H5.5
        NCBI gene 174178
        RefSeq protein NM_063086.6
        SwissProt UniProtAcc P34803
        UniProt_GCRP UniProtAcc P34803
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:21 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: col
    Allele (27)
    Legacy_information: [C.elegansII] NMK. Encodes 307 aa collagen, col-6 family. Transcript present L1, L1-L2, L2-dauer, not eggs, late larvae, adults. C15G2. [Levy and Kramer 1993]
    Strain: WBStrain00055321
    RNASeq_FPKM (74)
    GO_annotation: 00044550
      00044551
      00044552
      00107622
    Ortholog (41)
    Paralog (163)
    Structured_description: Concise_description: col-36 encodes a collagen protein; expressed during the L1 to L2 and L2 to dauer larval stage molts. Paper_evidence: WBPaper00001905
          Curator_confirmed: WBPerson48
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Predicted to be a structural constituent of cuticle. Predicted to be part of collagen trimer. Is an ortholog of human COL21A1 (collagen type XXI alpha 1 chain). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: DOID:9975 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:17025)
  Molecular_info: Corresponding_CDS: C27H5.5
    Corresponding_CDS_history: C27H5.5:wp236
      C27H5.5a:wp274
      C27H5.5b:wp274
    Corresponding_transcript: C27H5.5.1
    Other_sequence (54)
    Associated_feature: WBsf223303
      WBsf223304
  Experimental_info: RNAi_result: WBRNAi00027584 Inferred_automatically: RNAi_primary
      WBRNAi00041376 Inferred_automatically: RNAi_primary
      WBRNAi00011277 Inferred_automatically: RNAi_primary
      WBRNAi00041378 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr619
      Expr1013374
      Expr1030358
      Expr1145410
      Expr2010388
      Expr2028630
    Drives_construct: WBCnstr00037426
    Construct_product: WBCnstr00037426
    Microarray_results (17)
    Expression_cluster: WBPaper00029087:4-methylsterol_upregulated
      WBPaper00032031:DConiospora_downregulated_cDNA_24h
      WBPaper00033065:cyc-1(RNAi)_upregulated
      WBPaper00035269:cde-1_regulated
      WBPaper00038168:lin-15B(n744)_upregulated
      WBPaper00038438:D.coniospora_12hr_downregulated_RNAseq
      WBPaper00038438:Harposporium_24hr_upregulated_RNAseq
      WBPaper00038438:P.lumniescens_24hr_upregulated_RNAseq
      WBPaper00044578:reduced-humidity_downregulated_microarray
      WBPaper00045316:prg-1_upregulated_L4
      WBPaper00045417:128Q-huntingtin_downreglated
      WBPaper00045774:clk-1_upregulated
      WBPaper00046337:polysomal_daf-2_vs_daf-2;daf-16_downregulated
      WBPaper00046337:polysomal_N2_vs_daf-2_downregulated
      WBPaper00047132:glp-1(ts)-25C_upregulated
      WBPaper00049635:dop-1(vs100)_downregulated
      WBPaper00049942:HeatShock_upregulated_hsf-1(+)
      WBPaper00049942:HeatShock_upregulated_hsf-1(RNAi)
      WBPaper00049942:hsf-1(RNAi)_upregulated
      WBPaper00050096:P.aeruginosa_downregulated
      WBPaper00050370:dpy-21(e428)_L3_upregulated
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050504:hrp-2(RNAi)_downregulated
      WBPaper00050801:DAF-12_dauer_regulome
      WBPaper00050801:DAF-16_dauer_regulome
      WBPaper00050801:DPY-21_dauer_regulome
      WBPaper00050990:body-muscle_expressed
      WBPaper00050990:GABAergic-neuron_expressed
      WBPaper00050990:hypodermis_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00050990:NMDA-neuron_expressed
      WBPaper00050990:seam_expressed
      WBPaper00053295:lin-22(ot269)_upregulated
      WBPaper00053308:NMD(-)_upregulated_SMD-2_non-binding_ClassIII
      WBPaper00053388:dauer_regulated_Cluster3
      WBPaper00053771:up_at_24h-NaCl
      WBPaper00053810:daf-2(e1370)_upregulated
      WBPaper00053810:nuo-6(qm200)_upregulated
      WBPaper00053888:drh-3(rrr2)_upregulated
      WBPaper00055013:hmg-3(bar24)_upregulated
      WBPaper00055226:adr-1(tm668)_upregulated
      WBPaper00055354:Psora-Allantoin_upregulated
      WBPaper00055354:Psora_upregulated
      WBPaper00055354:Rapamycin-Psora-Allantoin_upregulated
      WBPaper00055354:Rapamycin-Psora_upregulated
      WBPaper00055354:Rapamycin-Rifampicin-Psora_upregulated
      WBPaper00055354:Rifampicin-Psora_upregulated
      WBPaper00055386:daf-2(e1370)_upregulated
      WBPaper00055565:AVK_enriched
      WBPaper00055897:heat-shock_upregulated
      WBPaper00055971:nhl-2(ok818)_20C_downregulated
      WBPaper00056284:ints-6(t1903)_upregulated
      WBPaper00056326:zip-3(gk3164)_upregulated_P.aeruginosa-infected
      WBPaper00056809:smn-1(ok355)_upregulated
      WBPaper00058955:heatshock_upregulated_CE
      WBPaper00059253:sucrose_downregulated
      WBPaper00059253:sucrose_stearic-acid_downregulated
      WBPaper00059421:daf-1(m40)_upregulated
      WBPaper00059421:daf-3(mgDf90)_downregulated
      WBPaper00059605:mut-16(pk710)_upregulated
      WBPaper00060445:ikb-1(nr2027)_downregulated_L4
      WBPaper00060445:nfki-1(cer1)_ikb-1(nr2027)_downregulated_L4
      WBPaper00060811:L1_vs_adult_upregulated_neural
      WBPaper00061340:CEP
      WBPaper00061341:28C_48h_upregulated
      WBPaper00061390:daf-22(ok693)_ascarosides_downregulated
      WBPaper00061527:col-84-col-45
      WBPaper00061590:CGP37157_upregulated
      WBPaper00061952:daf-18(nr2037)_downregulated
      WBPaper00061952:daf-18(yh1)_downregulated
      WBPaper00062193:skn-1(RNAi)_upregulated
      WBPaper00062446:nhr-8(hd117)_upregulated
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064122:vulva_transcriptome
      WBPaper00064291:antimycin_upregulated
      WBPaper00064494:postdauer_downregulated_WholeAnimal
      WBPaper00064632:daf-2(e1370)_upregulated_intestine
      WBPaper00064727:daf-2(e1370)_upregulated
      WBPaper00064788:ketamine_upregulated
      WBPaper00064939:vit-5(RNAi)_downregulated
      WBPaper00065258:anchor-cell_enriched
      WBPaper00065746:eat-2(ad1113)_downregulated
      WBPaper00065993:glp-1(e2141)_upregulated
      WBPaper00066146:germline-inx-14(RNAi)_upregulated_PA14
      WBPaper00066232:ash-2(RNAi)_upregulated_WT
      cgc4386_cluster_2_4
      cgc4489_group_9
      WBPaper00005124:progesterone_10-7M_regulated
      WBPaper00024393:strongly_regulated_dauer_genes
      WBPaper00026929:Resveratrol_regulated_daf-16
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00032062:age_regulated_genes
      WBPaper00034739:N2lessDR1350
      WBPaper00035588:alg-1(-)_upregulated
      WBPaper00038172:tax-6null_up_regulated
      WBPaper00040858:eQTL_age_regulated_developing
      WBPaper00040858:eQTL_regulated_developing
      WBPaper00040858:eQTL_regulated_juvenile
      WBPaper00041939:control_vs_EtBr-exposed_48h
      WBPaper00041939:control_vs_EtBr-exposed_51h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00042331:a-SWCNTs_downregulated
      WBPaper00046548:dafachronic-acid_downregulated
      WBPaper00048989:eat-2(ad465)_rapamycin_upregulated
      WBPaper00049311:Ag-MNP_regulated
      WBPaper00049311:AgNO3_regulated
      WBPaper00049311:sAg-MNP_regulated
    Interaction (41)
  Map_info: Map: II Position: 0.496541 Error: 0.000211
    Positive: Positive_clone: C27H5 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00001835
    WBPaper00001905
    WBPaper00001918
    WBPaper00001927
    WBPaper00006387
    WBPaper00015440
    WBPaper00029087
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene