WormBase Tree Display for Gene: WBGene00000615
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| WBGene00000615 | SMap | S_parent | Sequence | F54C9 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | col-38 | Person_evidence | WBPerson345 | |||||
| Sequence_name | F54C9.4 | ||||||||
| Molecular_name | F54C9.4 | ||||||||
| F54C9.4.1 | |||||||||
| CE20864 | |||||||||
| Other_name | CELE_F54C9.4 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | col-38 | ||||||||
| DB_info | Database | AceView | gene | 2I858 | |||||
| WormQTL | gene | WBGene00000615 | |||||||
| WormFlux | gene | WBGene00000615 | |||||||
| NDB | locus_tag | CELE_F54C9.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000615|UniProtKB=Q20754 | |||||||
| family | PTHR24637 | ||||||||
| NCBI | gene | 174370 | |||||||
| RefSeq | protein | NM_063409.7 | |||||||
| SwissProt | UniProtAcc | Q20754 | |||||||
| TREEFAM | TREEFAM_ID | TF319043 | |||||||
| UniProt_GCRP | UniProtAcc | Q20754 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | col | ||||||||
| Allele | WBVar01499702 | ||||||||
| WBVar00372368 | |||||||||
| WBVar01498435 | |||||||||
| WBVar01499423 | |||||||||
| WBVar00750967 | |||||||||
| WBVar00750968 | |||||||||
| WBVar01498940 | |||||||||
| WBVar00226353 | |||||||||
| Strain | WBStrain00033928 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00069005 | ||||||||
| 00069006 | |||||||||
| 00069007 | |||||||||
| 00069008 | |||||||||
| 00107624 | |||||||||
| Contained_in_operon | CEOP2732 | ||||||||
| Ortholog (30) | |||||||||
| Paralog (165) | |||||||||
| Structured_description | Concise_description | col-38 encodes a member of the collagen superfamily containing collagen triple helix repeats (20 copies) required for normal body morphology. | Paper_evidence | WBPaper00005654 | |||||
| Curator_confirmed | WBPerson48 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to be a structural constituent of cuticle. Involved in collagen and cuticulin-based cuticle development. Predicted to be located in nucleus. Expressed in hyp7 syncytium and seam cell. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F54C9.4 | |||||||
| Corresponding_transcript | F54C9.4.1 | ||||||||
| Other_sequence (21) | |||||||||
| Associated_feature | WBsf1026937 | ||||||||
| WBsf223519 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00048272 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00007283 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00032765 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00008849 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram557 | ||||||||
| Expr11723 | |||||||||
| Expr11729 | |||||||||
| Expr13633 | |||||||||
| Expr13639 | |||||||||
| Expr1010641 | |||||||||
| Expr1030360 | |||||||||
| Expr1152074 | |||||||||
| Expr2010390 | |||||||||
| Expr2028632 | |||||||||
| Drives_construct | WBCnstr00001078 | ||||||||
| WBCnstr00019337 | |||||||||
| WBCnstr00037424 | |||||||||
| WBCnstr00039893 | |||||||||
| Construct_product | WBCnstr00037424 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (306) | |||||||||
| Interaction (97) | |||||||||
| Map_info | Map | II | Position | 0.817682 | Error | 0.000363 | |||
| Positive | Positive_clone | F54C9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00043837 | |||||||||
| WBPaper00044857 | |||||||||
| WBPaper00048363 | |||||||||
| WBPaper00053906 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00059191 | |||||||||
| WBPaper00064788 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
