WormBase Tree Display for Gene: WBGene00000615

WBGene00000615 SMap: S_parent: Sequence: F54C9
  Identity: Version: 1
    Name: CGC_name: col-38 Person_evidence: WBPerson345
      Sequence_name: F54C9.4
      Molecular_name: F54C9.4
        F54C9.4.1
        CE20864
      Other_name: CELE_F54C9.4 Accession_evidence: NDB BX284602
      Public_name: col-38
    DB_info: Database: AceView gene 2I858
        WormQTL gene WBGene00000615
        WormFlux gene WBGene00000615
        NDB locus_tag CELE_F54C9.4
        Panther gene CAEEL|WormBase=WBGene00000615|UniProtKB=Q20754
          family PTHR24637
        NCBI gene 174370
        RefSeq protein NM_063409.7
        SwissProt UniProtAcc Q20754
        TREEFAM TREEFAM_ID TF319043
        UniProt_GCRP UniProtAcc Q20754
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:21 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: col
    Allele: WBVar01499702
      WBVar00372368
      WBVar01498435
      WBVar01499423
      WBVar00750967
      WBVar00750968
      WBVar01498940
      WBVar00226353
    Strain: WBStrain00033928
    RNASeq_FPKM (74)
    GO_annotation: 00069005
      00069006
      00069007
      00069008
      00107624
    Contained_in_operon: CEOP2732
    Ortholog (30)
    Paralog (165)
    Structured_description: Concise_description: col-38 encodes a member of the collagen superfamily containing collagen triple helix repeats (20 copies) required for normal body morphology. Paper_evidence: WBPaper00005654
          Curator_confirmed: WBPerson48
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Predicted to be a structural constituent of cuticle. Involved in collagen and cuticulin-based cuticle development. Predicted to be located in nucleus. Expressed in hyp7 syncytium and seam cell. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F54C9.4
    Corresponding_transcript: F54C9.4.1
    Other_sequence (21)
    Associated_feature: WBsf1026937
      WBsf223519
  Experimental_info: RNAi_result: WBRNAi00048272 Inferred_automatically: RNAi_primary
      WBRNAi00007283 Inferred_automatically: RNAi_primary
      WBRNAi00032765 Inferred_automatically: RNAi_primary
      WBRNAi00008849 Inferred_automatically: RNAi_primary
    Expr_pattern: Chronogram557
      Expr11723
      Expr11729
      Expr13633
      Expr13639
      Expr1010641
      Expr1030360
      Expr1152074
      Expr2010390
      Expr2028632
    Drives_construct: WBCnstr00001078
      WBCnstr00019337
      WBCnstr00037424
      WBCnstr00039893
    Construct_product: WBCnstr00037424
    Microarray_results (18)
    Expression_cluster (306)
    Interaction: WBInteraction000102517
      WBInteraction000103164
      WBInteraction000104935
      WBInteraction000105313
      WBInteraction000114407
      WBInteraction000117775
      WBInteraction000124935
      WBInteraction000125850
      WBInteraction000138089
      WBInteraction000142478
      WBInteraction000143698
      WBInteraction000144142
      WBInteraction000147329
      WBInteraction000148166
      WBInteraction000151013
      WBInteraction000160658
      WBInteraction000168115
      WBInteraction000177483
      WBInteraction000184862
      WBInteraction000189643
      WBInteraction000197229
      WBInteraction000199978
      WBInteraction000201445
      WBInteraction000201961
      WBInteraction000202850
      WBInteraction000205179
      WBInteraction000213289
      WBInteraction000219322
      WBInteraction000220821
      WBInteraction000230308
      WBInteraction000235106
      WBInteraction000242597
      WBInteraction000249060
      WBInteraction000253378
      WBInteraction000255415
      WBInteraction000266315
      WBInteraction000266495
      WBInteraction000266578
      WBInteraction000279166
      WBInteraction000290908
      WBInteraction000293974
      WBInteraction000295068
      WBInteraction000315402
      WBInteraction000317971
      WBInteraction000320363
      WBInteraction000321888
      WBInteraction000328529
      WBInteraction000340369
      WBInteraction000340661
      WBInteraction000342138
      WBInteraction000343747
      WBInteraction000352865
      WBInteraction000353269
      WBInteraction000356334
      WBInteraction000358504
      WBInteraction000361031
      WBInteraction000363174
      WBInteraction000363596
      WBInteraction000367733
      WBInteraction000368846
      WBInteraction000369907
      WBInteraction000376830
      WBInteraction000377022
      WBInteraction000378002
      WBInteraction000380460
      WBInteraction000382395
      WBInteraction000382622
      WBInteraction000386215
      WBInteraction000393062
      WBInteraction000395351
      WBInteraction000396818
      WBInteraction000400646
      WBInteraction000405704
      WBInteraction000407527
      WBInteraction000413483
      WBInteraction000428154
      WBInteraction000431867
      WBInteraction000436060
      WBInteraction000437139
      WBInteraction000439424
      WBInteraction000440256
      WBInteraction000446960
      WBInteraction000457751
      WBInteraction000468266
      WBInteraction000471572
      WBInteraction000472208
      WBInteraction000473920
      WBInteraction000474172
      WBInteraction000542944
      WBInteraction000542947
      WBInteraction000542949
      WBInteraction000542950
      WBInteraction000542951
      WBInteraction000542952
      WBInteraction000543616
      WBInteraction000557770
      WBInteraction000568446
  Map_info: Map: II Position: 0.817682 Error: 0.000363
    Positive: Positive_clone: F54C9 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00043837
    WBPaper00044857
    WBPaper00048363
    WBPaper00053906
    WBPaper00055090
    WBPaper00059191
    WBPaper00064788
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene