WormBase Tree Display for Gene: WBGene00000754
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| WBGene00000754 | Evidence | Person_evidence | WBPerson345 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| WBPerson651 | |||||||||
| SMap | S_parent | Sequence | W03G11 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | col-181 | Person_evidence | WBPerson345 | |||||
| Sequence_name | W03G11.1 | ||||||||
| Molecular_name | W03G11.1a | ||||||||
| W03G11.1a.1 | |||||||||
| CE26826 | |||||||||
| W03G11.1b | |||||||||
| CE03781 | |||||||||
| W03G11.1b.1 | |||||||||
| Other_name | CELE_W03G11.1 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | col-181 | ||||||||
| DB_info | Database | WormQTL | gene | WBGene00000754 | |||||
| WormFlux | gene | WBGene00000754 | |||||||
| NDB | locus_tag | CELE_W03G11.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000754|UniProtKB=Q23150 | |||||||
| family | PTHR24637 | ||||||||
| NCBI | gene | 181378 | |||||||
| RefSeq | protein | NM_001047830.5 | |||||||
| NM_001047831.4 | |||||||||
| TrEMBL | UniProtAcc | Q2XN04 | |||||||
| Q23150 | |||||||||
| UniProt_GCRP | UniProtAcc | Q23150 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | col | ||||||||
| Allele (29) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00077444 | ||||||||
| 00077445 | |||||||||
| 00077446 | |||||||||
| 00107740 | |||||||||
| Ortholog (33) | |||||||||
| Paralog (163) | |||||||||
| Structured_description | Concise_description | col-181 is homologous to the human gene PRO ALPHA 1(I) COLLAGEN (COL1A1; OMIM:120150), which when mutated leads to osteogenesis imperfecta. | Curator_confirmed | WBPerson1823 | |||||
| WBPerson567 | |||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to be a structural constituent of cuticle. Predicted to be located in membrane. Predicted to be part of collagen trimer. Human ortholog(s) of this gene implicated in pulmonary tuberculosis. Is an ortholog of human COL5A3 (collagen type V alpha 3 chain) and MARCO (macrophage receptor with collagenous structure). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:2957 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:6895) | ||||
| Molecular_info | Corresponding_CDS | W03G11.1a | |||||||
| W03G11.1b | |||||||||
| Corresponding_CDS_history | W03G11.1:wp42 | ||||||||
| Corresponding_transcript | W03G11.1a.1 | ||||||||
| W03G11.1b.1 | |||||||||
| Other_sequence (11) | |||||||||
| Associated_feature | WBsf648586 | ||||||||
| WBsf648587 | |||||||||
| WBsf1007212 | |||||||||
| WBsf1023989 | |||||||||
| WBsf236452 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00036249 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00019577 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00054721 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00007451 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1010761 | ||||||||
| Expr1030461 | |||||||||
| Expr1158258 | |||||||||
| Expr2010376 | |||||||||
| Expr2028618 | |||||||||
| Drives_construct | WBCnstr00037304 | ||||||||
| Construct_product | WBCnstr00037304 | ||||||||
| Microarray_results (24) | |||||||||
| Expression_cluster (260) | |||||||||
| Interaction (171) | |||||||||
| Map_info | Map | X | Position | 7.0052 | |||||
| Positive | Positive_clone | W03G11 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00032322 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00065331 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
