WormBase Tree Display for Gene: WBGene00000752

WBGene00000752 Evidence: Person_evidence: WBPerson345
      WBPerson651
  SMap: S_parent: Sequence: C34F6
  Identity: Version: 1
    Name: CGC_name: col-179 Person_evidence: WBPerson345
      Sequence_name: C34F6.3
      Molecular_name: C34F6.3
        C34F6.3.1
        CE15672
      Other_name: CELE_C34F6.3 Accession_evidence: NDB BX284606
      Public_name: col-179
    DB_info: Database: AceView gene XL821
        WormQTL gene WBGene00000752
        WormFlux gene WBGene00000752
        NDB locus_tag CELE_C34F6.3
        Panther gene CAEEL|WormBase=WBGene00000752|UniProtKB=O17642
          family PTHR24023
        NCBI gene 181308
        RefSeq protein NM_077469.9
        TrEMBL UniProtAcc O17642
        UniProt_GCRP UniProtAcc O17642
        OMIM gene 120260
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:21 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: col
    Allele (20)
    Strain: WBStrain00032906
    RNASeq_FPKM (74)
    GO_annotation: 00030202
      00030203
      00030204
      00030205
      00030206
      00107738
    Ortholog (54)
    Paralog (161)
    Structured_description: Automated_description: Predicted to be a structural constituent of cuticle. Involved in defense response to Gram-negative bacterium and innate immune response. Predicted to be located in membrane. Predicted to be part of collagen trimer. Human ortholog(s) of this gene implicated in Stickler syndrome; multiple epiphyseal dysplasia 2; and pulmonary tuberculosis. Is an ortholog of human COL9A2 (collagen type IX alpha 2 chain) and MARCO (macrophage receptor with collagenous structure). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: DOID:0070298 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:2218)
      DOID:2256 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:2218)
      DOID:2957 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:6895)
      DOID:0080046 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:2218)
  Molecular_info: Corresponding_CDS: C34F6.3
    Corresponding_transcript: C34F6.3.1
    Other_sequence (28)
    Associated_feature: WBsf236359
  Experimental_info: RNAi_result: WBRNAi00011623 Inferred_automatically: RNAi_primary
      WBRNAi00023076 Inferred_automatically: RNAi_primary
      WBRNAi00115369 Inferred_automatically: RNAi_primary
      WBRNAi00029546 Inferred_automatically: RNAi_primary
      WBRNAi00041920 Inferred_automatically: RNAi_primary
      WBRNAi00114424 Inferred_automatically: RNAi_primary
      WBRNAi00065105 Inferred_automatically: RNAi_primary
      WBRNAi00011624 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1145928
      Expr2010373
      Expr2028616
    Drives_construct: WBCnstr00037306
    Construct_product: WBCnstr00037306
    Microarray_results (19)
    Expression_cluster (286)
    Interaction (161)
  Map_info: Map: X Position: 2.8615 Error: 0.000181
    Positive: Positive_clone: C34F6 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00025088
    WBPaper00028482
    WBPaper00038491
    WBPaper00055090
    WBPaper00065331
    WBPaper00065988
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene