WormBase Tree Display for Gene: WBGene00000752

WBGene00000752 Evidence: Person_evidence: WBPerson345
      WBPerson651
  SMap: S_parent: Sequence: C34F6
  Identity: Version: 1
    Name: CGC_name: col-179 Person_evidence: WBPerson345
      Sequence_name: C34F6.3
      Molecular_name: C34F6.3
        C34F6.3.1
        CE15672
      Other_name: CELE_C34F6.3 Accession_evidence: NDB BX284606
      Public_name: col-179
    DB_info: Database: AceView gene XL821
        WormQTL gene WBGene00000752
        WormFlux gene WBGene00000752
        NDB locus_tag CELE_C34F6.3
        Panther gene CAEEL|WormBase=WBGene00000752|UniProtKB=O17642
          family PTHR24023
        NCBI gene 181308
        RefSeq protein NM_077469.9
        TrEMBL UniProtAcc O17642
        UniProt_GCRP UniProtAcc O17642
        OMIM gene 120260
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:21 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: col
    Allele (20)
    Strain: WBStrain00032906
    RNASeq_FPKM (74)
    GO_annotation: 00030202
      00030203
      00030204
      00030205
      00030206
      00107738
    Ortholog (54)
    Paralog (161)
    Structured_description: Automated_description: Predicted to be a structural constituent of cuticle. Involved in defense response to Gram-negative bacterium and innate immune response. Predicted to be located in membrane. Predicted to be part of collagen trimer. Human ortholog(s) of this gene implicated in Stickler syndrome; multiple epiphyseal dysplasia 2; and pulmonary tuberculosis. Is an ortholog of human COL9A2 (collagen type IX alpha 2 chain) and MARCO (macrophage receptor with collagenous structure). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: DOID:0070298 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:2218)
      DOID:2256 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:2218)
      DOID:2957 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:6895)
      DOID:0080046 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:2218)
  Molecular_info: Corresponding_CDS: C34F6.3
    Corresponding_transcript: C34F6.3.1
    Other_sequence (28)
    Associated_feature: WBsf236359
  Experimental_info: RNAi_result: WBRNAi00011623 Inferred_automatically: RNAi_primary
      WBRNAi00023076 Inferred_automatically: RNAi_primary
      WBRNAi00115369 Inferred_automatically: RNAi_primary
      WBRNAi00029546 Inferred_automatically: RNAi_primary
      WBRNAi00041920 Inferred_automatically: RNAi_primary
      WBRNAi00114424 Inferred_automatically: RNAi_primary
      WBRNAi00065105 Inferred_automatically: RNAi_primary
      WBRNAi00011624 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1145928
      Expr2010373
      Expr2028616
    Drives_construct: WBCnstr00037306
    Construct_product: WBCnstr00037306
    Microarray_results (19)
    Expression_cluster (286)
    Interaction: WBInteraction000103806
      WBInteraction000105526
      WBInteraction000105772
      WBInteraction000108790
      WBInteraction000114635
      WBInteraction000115366
      WBInteraction000115443
      WBInteraction000133875
      WBInteraction000134537
      WBInteraction000142183
      WBInteraction000143462
      WBInteraction000146171
      WBInteraction000146262
      WBInteraction000148809
      WBInteraction000149283
      WBInteraction000151372
      WBInteraction000151389
      WBInteraction000163111
      WBInteraction000163263
      WBInteraction000163821
      WBInteraction000164019
      WBInteraction000165386
      WBInteraction000168283
      WBInteraction000168456
      WBInteraction000168941
      WBInteraction000170422
      WBInteraction000170885
      WBInteraction000172065
      WBInteraction000174591
      WBInteraction000176264
      WBInteraction000181176
      WBInteraction000184006
      WBInteraction000187276
      WBInteraction000187661
      WBInteraction000188125
      WBInteraction000191236
      WBInteraction000193905
      WBInteraction000195436
      WBInteraction000195868
      WBInteraction000197460
      WBInteraction000198549
      WBInteraction000201765
      WBInteraction000203077
      WBInteraction000209286
      WBInteraction000211939
      WBInteraction000212706
      WBInteraction000215567
      WBInteraction000215608
      WBInteraction000215696
      WBInteraction000216626
      WBInteraction000216663
      WBInteraction000217504
      WBInteraction000217754
      WBInteraction000219682
      WBInteraction000220003
      WBInteraction000221222
      WBInteraction000224327
      WBInteraction000227738
      WBInteraction000228166
      WBInteraction000230393
      WBInteraction000230581
      WBInteraction000231726
      WBInteraction000234118
      WBInteraction000234169
      WBInteraction000237569
      WBInteraction000239130
      WBInteraction000242527
      WBInteraction000243048
      WBInteraction000243343
      WBInteraction000245579
      WBInteraction000252481
      WBInteraction000255315
      WBInteraction000255448
      WBInteraction000255749
      WBInteraction000257416
      WBInteraction000258607
      WBInteraction000259966
      WBInteraction000261860
      WBInteraction000263443
      WBInteraction000265538
      WBInteraction000267283
      WBInteraction000267683
      WBInteraction000269476
      WBInteraction000270474
      WBInteraction000272358
      WBInteraction000275784
      WBInteraction000277610
      WBInteraction000278024
      WBInteraction000282312
      WBInteraction000286077
      WBInteraction000286627
      WBInteraction000287061
      WBInteraction000287311
      WBInteraction000291055
      WBInteraction000297507
      WBInteraction000297541
      WBInteraction000299601
      WBInteraction000308567
      WBInteraction000308845
      WBInteraction000309889
      WBInteraction000311384
      WBInteraction000313938
      WBInteraction000318859
      WBInteraction000320175
      WBInteraction000320435
      WBInteraction000320740
      WBInteraction000322819
      WBInteraction000331308
      WBInteraction000334418
      WBInteraction000335403
      WBInteraction000341519
      WBInteraction000343100
      WBInteraction000352578
      WBInteraction000355622
      WBInteraction000355841
      WBInteraction000355901
      WBInteraction000359234
      WBInteraction000359853
      WBInteraction000360720
      WBInteraction000365855
      WBInteraction000366194
      WBInteraction000366930
      WBInteraction000368286
      WBInteraction000371578
      WBInteraction000373994
      WBInteraction000374995
      WBInteraction000376186
      WBInteraction000376505
      WBInteraction000378539
      WBInteraction000379815
      WBInteraction000380284
      WBInteraction000390519
      WBInteraction000391068
      WBInteraction000392926
      WBInteraction000394678
      WBInteraction000397253
      WBInteraction000399665
      WBInteraction000407389
      WBInteraction000409566
      WBInteraction000409948
      WBInteraction000412426
      WBInteraction000416088
      WBInteraction000417385
      WBInteraction000420925
      WBInteraction000422876
      WBInteraction000424852
      WBInteraction000425715
      WBInteraction000437078
      WBInteraction000437921
      WBInteraction000440490
      WBInteraction000446796
      WBInteraction000448819
      WBInteraction000453089
      WBInteraction000454136
      WBInteraction000460715
      WBInteraction000460891
      WBInteraction000461876
      WBInteraction000466246
      WBInteraction000468300
      WBInteraction000468980
      WBInteraction000557794
  Map_info: Map: X Position: 2.8615 Error: 0.000181
    Positive: Positive_clone: C34F6 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00025088
    WBPaper00028482
    WBPaper00038491
    WBPaper00055090
    WBPaper00065331
    WBPaper00065988
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene