WormBase Tree Display for CDS: C34F6.3
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C34F6.3 | Evidence | Inferred_automatically | make_isoforms.pl | |||
---|---|---|---|---|---|---|
SMap | S_parent | Sequence | C34F6 | |||
Structure | Source_exons | 1 | 191 | |||
244 | 904 | |||||
DB_info | Database | TrEMBL | UniProtAcc | O17642 | ||
UniProt | UniProtAcc | O17642 | ||||
UniProt_GCRP | UniProtAcc | O17642 | ||||
AlphaFold | entry | O17642 | ||||
NCBI_protein | GI_number | GI:3874798 | ||||
Protein_id | CHROMOSOME_X | CAB03942 | 1 | |||
DB_remark | COL-179 protein; contains similarity to Pfam domains PF01391 (Collagen triple helix repeat (20 copies)), PF01484 (Nematode cuticle collagen N-terminal domain); contains similarity to Interpro domains IPR002486 (Nematode cuticle collagen, N-terminal), IPR008160 (Collagen triple helix repeat) | |||||
Origin | From_laboratory | HX | ||||
Species | Caenorhabditis elegans | |||||
Properties | Coding | CDS | ||||
Prediction_status | Confirmed | |||||
Visible | Gene | WBGene00000752 | ||||
Corresponding_transcript | C34F6.3.1 | |||||
Corresponding_protein | CE15672 | |||||
Corresponding_PCR_product | cenix:182-c3 | |||||
mv_C34F6.3 | ||||||
sjj_C34F6.3 | ||||||
Corresponding_oligo_set (18) | ||||||
Matching_cDNA (35) | ||||||
RNAi_result | WBRNAi00011623 | |||||
WBRNAi00023076 | ||||||
WBRNAi00115369 | ||||||
WBRNAi00029546 | ||||||
WBRNAi00041920 | ||||||
WBRNAi00114424 | ||||||
WBRNAi00065105 | ||||||
WBRNAi00011624 | ||||||
Microarray_results (19) | ||||||
Brief_identification | Nematode cuticle collagen N-terminal domain-containing protein | Accession_evidence | UniProt | TR:O17642 | ||
RNASeq_FPKM (74) | ||||||
Method | curated |