Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for Expression_cluster: WBPaper00045316:prg-1_downregulated_L4

expand all nodes | collapse all nodes | view schema

Name Class

WBPaper00045316:prg-1_downregulated_L4DescriptionProtein coding genes with decreased expression in prg-1(wm161) comparing to in N2.
SpeciesCaenorhabditis elegans
AlgorithmCuffdiff and DEGseq were used to calculate the differential expression of protein-coding genes with and without the prg-1 mutation, and authors selected genes which had more than two-fold difference in expression (P < 0.05, q < 0.01 of Storey) from DEGseq outcomes. The intersection of genes which authors selected from DEGseq outcomes and genes which had more than two-fold difference in expression (P < 0.05) from Cuffdiff outcomes was defined as differentially expressed genes.
ReferenceWBPaper00045316
Based_on_WB_Release
GeneWBGene00022162DEGseq p-value: 0.000245243, cuff diff p-value :0.0319
WBGene00013894DEGseq p-value: 1.04E-86, cuff diff p-value :0.0297
WBGene00011134DEGseq p-value: 1.75E-14, cuff diff p-value :0.0005
WBGene00000615DEGseq p-value: 0, cuff diff p-value :0.00405
WBGene00017808DEGseq p-value: 3.85E-06, cuff diff p-value :0.0157
WBGene00003093DEGseq p-value: 1.08E-276, cuff diff p-value :0.01365
WBGene00013279DEGseq p-value: 1.50E-12, cuff diff p-value :0.0319
WBGene00013556DEGseq p-value: 0.000245243, cuff diff p-value :0.0319
WBGene00021730DEGseq p-value: 2.42E-05, cuff diff p-value :0.0234
WBGene00003771DEGseq p-value: 2.65E-118, cuff diff p-value :0.0166
WBGene00045036DEGseq p-value: 3.95E-09, cuff diff p-value :0.0033
WBGene00000474DEGseq p-value: 7.96E-243, cuff diff p-value :0.0073
WBGene00010596DEGseq p-value: 1.14E-07, cuff diff p-value :0.00645
WBGene00004994DEGseq p-value: 1.50E-145, cuff diff p-value :5.00E-05
WBGene00010961DEGseq p-value: 2.33E-259, cuff diff p-value :0.0169
WBGene00009449DEGseq p-value: 1.56E-10, cuff diff p-value :0.00645
WBGene00005599DEGseq p-value: 2.42E-05, cuff diff p-value :0.0234
WBGene00010184DEGseq p-value: 6.45E-11, cuff diff p-value :0.0015
WBGene00000626DEGseq p-value: 0, cuff diff p-value :0.0012
WBGene00012831DEGseq p-value: 3.24E-11, cuff diff p-value :0.00105
WBGene00021153DEGseq p-value: 2.42E-05, cuff diff p-value :0.0234
WBGene00020588DEGseq p-value: 7.22E-67, cuff diff p-value :0.0416
WBGene00015422DEGseq p-value: 3.85E-06, cuff diff p-value :0.0157
WBGene00017817DEGseq p-value: 1.14E-07, cuff diff p-value :0.00645
WBGene00000636DEGseq p-value: 0, cuff diff p-value :0.0059
WBGene00022594DEGseq p-value: 0.000703969, cuff diff p-value :0.0319
WBGene00009956DEGseq p-value: 1.14E-07, cuff diff p-value :0.00085
WBGene00023424DEGseq p-value: 3.95E-09, cuff diff p-value :0.0033
WBGene00015894DEGseq p-value: 3.85E-10, cuff diff p-value :0.04705
WBGene00015893DEGseq p-value: 3.24E-11, cuff diff p-value :0.01205
WBGene00013657DEGseq p-value: 3.85E-06, cuff diff p-value :0.0157
WBGene00009683DEGseq p-value: 2.42E-05, cuff diff p-value :0.0234
WBGene00014997DEGseq p-value: 2.42E-05, cuff diff p-value :0.0208
WBGene00012191DEGseq p-value: 2.42E-05, cuff diff p-value :0.0095
WBGene00015193DEGseq p-value: 1.75E-14, cuff diff p-value :0.00025
WBGene00044122DEGseq p-value: 6.46E-07, cuff diff p-value :0.01125
WBGene00020991DEGseq p-value: 8.17E-47, cuff diff p-value :0.00645
WBGene00021368DEGseq p-value: 1.56E-10, cuff diff p-value :0.0015
WBGene00004394DEGseq p-value: 0, cuff diff p-value :0.0005
WBGene00007300DEGseq p-value: 7.57E-14, cuff diff p-value :0.04765
WBGene00017902DEGseq p-value: 1.14E-07, cuff diff p-value :0.01125
WBGene00017055DEGseq p-value: 3.85E-06, cuff diff p-value :0.0157
WBGene00012509DEGseq p-value: 1.14E-07, cuff diff p-value :0.00645
WBGene00044261DEGseq p-value: 1.56E-10, cuff diff p-value :0.0015
WBGene00016636DEGseq p-value: 6.57E-156, cuff diff p-value :0.023
WBGene00021875DEGseq p-value: 9.24E-280, cuff diff p-value :0.0175
WBGene00019450DEGseq p-value: 2.61E-68, cuff diff p-value :0.0401
WBGene00010634DEGseq p-value: 1.75E-14, cuff diff p-value :0.0005
WBGene00004374DEGseq p-value: 1.13E-189, cuff diff p-value :0.0122
WBGene00000693DEGseq p-value: 0, cuff diff p-value :0.0341
WBGene00009035DEGseq p-value: 6.71E-165, cuff diff p-value :0.02615
WBGene00020290DEGseq p-value: 3.24E-11, cuff diff p-value :0.00035
WBGene00011322DEGseq p-value: 6.36E-14, cuff diff p-value :0.0004
WBGene00003462DEGseq p-value: 1.76E-126, cuff diff p-value :0.00645
WBGene00021720DEGseq p-value: 6.46E-07, cuff diff p-value :0.01125
WBGene00011336DEGseq p-value: 8.46E-17, cuff diff p-value :0.04925
WBGene00009463DEGseq p-value: 1.47E-17, cuff diff p-value :0.00015
WBGene00013186DEGseq p-value: 1.56E-10, cuff diff p-value :0.0015
WBGene00008804DEGseq p-value: 6.46E-07, cuff diff p-value :0.01125
WBGene00010957DEGseq p-value: 8.15E-243, cuff diff p-value :0.02035
WBGene00006038DEGseq p-value: 1.00E-193, cuff diff p-value :0.0234
WBGene00022005DEGseq p-value: 0, cuff diff p-value :0.0234
WBGene00010966DEGseq p-value: 0, cuff diff p-value :0.0063
WBGene00050947DEGseq p-value: 3.24E-05, cuff diff p-value :0.0234
WBGene00020416DEGseq p-value: 1.56E-10, cuff diff p-value :0.0015
WBGene00017678DEGseq p-value: 0, cuff diff p-value :0.0035
WBGene00004997DEGseq p-value: 2.67E-74, cuff diff p-value :5.00E-05
WBGene00013170DEGseq p-value: 6.44E-07, cuff diff p-value :0.0157
WBGene00009005DEGseq p-value: 3.85E-06, cuff diff p-value :0.0033
WBGene00014174DEGseq p-value: 2.42E-05, cuff diff p-value :0.0234
WBGene00009938DEGseq p-value: 9.83E-16, cuff diff p-value :0.0004
WBGene00021997DEGseq p-value: 0, cuff diff p-value :0.00345
WBGene00021537DEGseq p-value: 2.42E-05, cuff diff p-value :0.0234
WBGene00015348DEGseq p-value: 1.93E-12, cuff diff p-value :0.0033
WBGene00000639DEGseq p-value: 0, cuff diff p-value :0.00265
WBGene00007081DEGseq p-value: 1.50E-12, cuff diff p-value :0.0014
WBGene00000252DEGseq p-value: 0, cuff diff p-value :0.01355
WBGene00015112DEGseq p-value: 2.42E-05, cuff diff p-value :0.0187
WBGene00021581DEGseq p-value: 6.90E-12, cuff diff p-value :0.00095
WBGene00011011DEGseq p-value: 3.95E-09, cuff diff p-value :0.00645
WBGene00013296DEGseq p-value: 2.42E-05, cuff diff p-value :0.0234
WBGene00011460DEGseq p-value: 1.70E-73, cuff diff p-value :0.0462
WBGene00016752DEGseq p-value: 4.23E-119, cuff diff p-value :0.0319
WBGene00022875DEGseq p-value: 1.82E-53, cuff diff p-value :5.00E-05
WBGene00044080DEGseq p-value: 5.19E-70, cuff diff p-value :0.02915
WBGene00008186DEGseq p-value: 8.46E-17, cuff diff p-value :0.00025
WBGene00012905DEGseq p-value: 1.19E-05, cuff diff p-value :0.0157
WBGene00013954DEGseq p-value: 3.24E-05, cuff diff p-value :0.0234
WBGene00000757DEGseq p-value: 0, cuff diff p-value :0.0008
WBGene00008378DEGseq p-value: 1.51E-84, cuff diff p-value :0.03325
WBGene00011010DEGseq p-value: 3.34E-13, cuff diff p-value :0.00095
WBGene00018099DEGseq p-value: 6.46E-07, cuff diff p-value :0.0111
WBGene00016950DEGseq p-value: 2.42E-05, cuff diff p-value :0.0234
WBGene00000597DEGseq p-value: 0, cuff diff p-value :0.0072
WBGene00007610DEGseq p-value: 1.14E-07, cuff diff p-value :0.00645
WBGene00022070DEGseq p-value: 6.46E-07, cuff diff p-value :0.01125
WBGene00009186DEGseq p-value: 1.83E-76, cuff diff p-value :0.04355
WBGene00044275DEGseq p-value: 1.28E-21, cuff diff p-value :0.0033
WBGene00009502DEGseq p-value: 3.24E-11, cuff diff p-value :0.00645
WBGene00050915DEGseq p-value: 1.50E-12, cuff diff p-value :0.0008
WBGene00018631DEGseq p-value: 2.42E-05, cuff diff p-value :0.0234
WBGene00000465DEGseq p-value: 5.01E-115, cuff diff p-value :0.01555
WBGene00010967DEGseq p-value: 2.80E-185, cuff diff p-value :0.0063
WBGene00012402DEGseq p-value: 2.42E-05, cuff diff p-value :0.012
WBGene00014104DEGseq p-value: 7.74E-10, cuff diff p-value :0.00345
WBGene00015696DEGseq p-value: 1.14E-07, cuff diff p-value :0.00645
WBGene00018123DEGseq p-value: 2.86E-16, cuff diff p-value :0.0319
WBGene00004798DEGseq p-value: 1.00E-159, cuff diff p-value :0.0178
WBGene00013775DEGseq p-value: 3.85E-06, cuff diff p-value :0.0234
WBGene00019096DEGseq p-value: 1.50E-12, cuff diff p-value :0.0033
WBGene00000694DEGseq p-value: 1.28E-290, cuff diff p-value :0.00335
WBGene00011156DEGseq p-value: 0, cuff diff p-value :0.01875
WBGene00016303DEGseq p-value: 1.14E-07, cuff diff p-value :0.00645
WBGene00000698DEGseq p-value: 0, cuff diff p-value :0.00795
WBGene00010958DEGseq p-value: 1.14E-111, cuff diff p-value :0.02035
WBGene00021373DEGseq p-value: 2.42E-05, cuff diff p-value :0.0234
WBGene00012401DEGseq p-value: 3.85E-10, cuff diff p-value :0.00345
WBGene00021853DEGseq p-value: 6.46E-07, cuff diff p-value :0.0086
WBGene00018253DEGseq p-value: 3.48E-13, cuff diff p-value :0.0008
WBGene00016956DEGseq p-value: 0.000245243, cuff diff p-value :0.0319
WBGene00021791DEGseq p-value: 6.20E-136, cuff diff p-value :0.01045
WBGene00017691DEGseq p-value: 9.01E-120, cuff diff p-value :0.00875
WBGene00012211DEGseq p-value: 2.08E-08, cuff diff p-value :0.01125
WBGene00022133
WBGene00018122DEGseq p-value: 1.72E-30, cuff diff p-value :0.01125
WBGene00020187DEGseq p-value: 1.62E-86, cuff diff p-value :0.04405
WBGene00004434DEGseq p-value: 0, cuff diff p-value :0.0474
WBGene00013087DEGseq p-value: 1.14E-07, cuff diff p-value :0.0056
WBGene00015034DEGseq p-value: 2.08E-08, cuff diff p-value :0.00545
WBGene00007709DEGseq p-value: 1.13E-181, cuff diff p-value :0.0282
WBGene00022669DEGseq p-value: 2.42E-05, cuff diff p-value :0.0234
WBGene00000663DEGseq p-value: 0, cuff diff p-value :0.00395
WBGene00007274DEGseq p-value: 3.51E-22, cuff diff p-value :5.00E-05
WBGene00000657DEGseq p-value: 0, cuff diff p-value :0.002
WBGene00009069DEGseq p-value: 1.01E-234, cuff diff p-value :0.019
WBGene00008649DEGseq p-value: 7.57E-14, cuff diff p-value :0.0234
WBGene00003456DEGseq p-value: 2.60E-169, cuff diff p-value :0.00545
WBGene00007870DEGseq p-value: 2.23E-13, cuff diff p-value :0.0234
WBGene00001246DEGseq p-value: 0.000703969, cuff diff p-value :0.0341
WBGene00009125DEGseq p-value: 3.85E-06, cuff diff p-value :0.0121
WBGene00012754DEGseq p-value: 0.042276813, cuff diff p-value :0.04765
WBGene00010613DEGseq p-value: 1.48E-08, cuff diff p-value :0.00545
WBGene00000678DEGseq p-value: 0, cuff diff p-value :0.03415
WBGene00000256
WBGene00219286DEGseq p-value: 2.08E-08, cuff diff p-value :0.01125
WBGene00007714DEGseq p-value: 3.24E-22, cuff diff p-value :0.01125
WBGene00016954DEGseq p-value: 1.92E-15, cuff diff p-value :0.0157
WBGene00044475DEGseq p-value: 1.50E-12, cuff diff p-value :0.0008
WBGene00044272DEGseq p-value: 5.02E-180, cuff diff p-value :0.0004
WBGene00019562DEGseq p-value: 4.24E-12, cuff diff p-value :0.00645
WBGene00020072DEGseq p-value: 6.61E-18, cuff diff p-value :0.0157
WBGene00006040DEGseq p-value: 7.92E-202, cuff diff p-value :0.00345
WBGene00206368DEGseq p-value: 2.42E-05, cuff diff p-value :0.0234
WBGene00077563
WBGene00012871DEGseq p-value: 5.89E-17, cuff diff p-value :0.00345
WBGene00195169DEGseq p-value: 2.42E-05, cuff diff p-value :0.0199
WBGene00194647DEGseq p-value: 2.42E-05, cuff diff p-value :0.0319
WBGene00021779DEGseq p-value: 5.20E-194, cuff diff p-value :0.0143
WBGene00013304DEGseq p-value: 2.42E-05, cuff diff p-value :0.0234
WBGene00021993DEGseq p-value: 1.15E-112, cuff diff p-value :0.0319
WBGene00022157DEGseq p-value: 5.89E-10, cuff diff p-value :0.0234
WBGene00022621DEGseq p-value: 7.20E-15, cuff diff p-value :0.0319
WBGene00006048DEGseq p-value: 1.14E-07, cuff diff p-value :0.00645
WBGene00219460DEGseq p-value: 3.34E-13, cuff diff p-value :0.0004
WBGene00044218DEGseq p-value: 1.22E-06, cuff diff p-value :0.04765
WBGene00023467DEGseq p-value: 9.03E-35, cuff diff p-value :0.03925
WBGene00023452DEGseq p-value: 0.000245243, cuff diff p-value :0.0293
WBGene00219609DEGseq p-value: 5.65E-203, cuff diff p-value :0.02155
WBGene00023193DEGseq p-value: 7.71E-24, cuff diff p-value :5.00E-05
WBGene00045162DEGseq p-value: 1.15E-31, cuff diff p-value :0.01125
WBGene00045164DEGseq p-value: 9.17E-41, cuff diff p-value :0.00095
WBGene00004622DEGseq p-value: 0, cuff diff p-value :0.0056
WBGene00000308DEGseq p-value: 6.46E-07, cuff diff p-value :0.01125
WBGene00000709DEGseq p-value: 1.15E-15, cuff diff p-value :0.0054
WBGene00004567DEGseq p-value: 0, cuff diff p-value :0.01525
WBGene00004677DEGseq p-value: 0, cuff diff p-value :0.02615
WBGene00009651DEGseq p-value: 6.46E-07, cuff diff p-value :0.01125
WBGene00014404DEGseq p-value: 9.83E-28, cuff diff p-value :0.0227
WBGene00014424DEGseq p-value: 6.46E-07, cuff diff p-value :0.0086
WBGene00014451DEGseq p-value: 2.08E-08, cuff diff p-value :0.01125
WBGene00014456DEGseq p-value: 1.56E-10, cuff diff p-value :0.0015
WBGene00014863DEGseq p-value: 3.85E-06, cuff diff p-value :0.0319
WBGene00022961DEGseq p-value: 9.74E-23, cuff diff p-value :0.0059
WBGene00022963DEGseq p-value: 3.95E-09, cuff diff p-value :0.0234
WBGene00023030DEGseq p-value: 3.85E-06, cuff diff p-value :0.0234
WBGene00023063DEGseq p-value: 0, cuff diff p-value :5.00E-05
WBGene00023108DEGseq p-value: 2.58E-82, cuff diff p-value :5.00E-05
WBGene00023132DEGseq p-value: 3.24E-11, cuff diff p-value :0.0033
WBGene00023178DEGseq p-value: 2.56E-106, cuff diff p-value :0.0175
WBGene00023207DEGseq p-value: 3.89E-42, cuff diff p-value :5.00E-05
WBGene00023218DEGseq p-value: 1.21E-115, cuff diff p-value :5.00E-05
WBGene00044042DEGseq p-value: 3.85E-06, cuff diff p-value :0.0157
WBGene00044704DEGseq p-value: 1.50E-12, cuff diff p-value :0.0002
WBGene00044930DEGseq p-value: 3.73E-18, cuff diff p-value :0.0004
WBGene00044954DEGseq p-value: 0.000993115, cuff diff p-value :0.0192
WBGene00045105DEGseq p-value: 3.24E-11, cuff diff p-value :0.04765
WBGene00045129DEGseq p-value: 3.34E-13, cuff diff p-value :0.0033
WBGene00045156DEGseq p-value: 1.16E-32, cuff diff p-value :5.00E-05
WBGene00045163DEGseq p-value: 3.51E-22, cuff diff p-value :0.0234
WBGene00045167DEGseq p-value: 2.73E-23, cuff diff p-value :0.00545
WBGene00045171DEGseq p-value: 4.11E-15, cuff diff p-value :0.0157
WBGene00045367DEGseq p-value: 0.016588767, cuff diff p-value :0.01885
WBGene00045370DEGseq p-value: 2.20E-83, cuff diff p-value :5.00E-05
WBGene00195245DEGseq p-value: 0.001957038, cuff diff p-value :0.04765
WBGene00195864DEGseq p-value: 0, cuff diff p-value :5.00E-05
WBGene00196039DEGseq p-value: 1.01E-66, cuff diff p-value :0.0014
WBGene00196396DEGseq p-value: 0, cuff diff p-value :5.00E-05
WBGene00196542DEGseq p-value: 2.79E-45, cuff diff p-value :0.0075
WBGene00199325DEGseq p-value: 8.59E-05, cuff diff p-value :0.01785
WBGene00199674DEGseq p-value: 4.15E-35, cuff diff p-value :5.00E-05
WBGene00199694DEGseq p-value: 2.42E-05, cuff diff p-value :0.0234
WBGene00199798DEGseq p-value: 4.11E-15, cuff diff p-value :0.0009
WBGene00200337DEGseq p-value: 5.89E-17, cuff diff p-value :0.0031
WBGene00201830DEGseq p-value: 0, cuff diff p-value :5.00E-05
WBGene00219800DEGseq p-value: 3.73E-30, cuff diff p-value :5.00E-05
WBGene00219805DEGseq p-value: 0.026031024, cuff diff p-value :0.04765
WBGene00219947DEGseq p-value: 1.50E-12, cuff diff p-value :0.0007
WBGene00219948DEGseq p-value: 4.48E-07, cuff diff p-value :0.0222
WBGene00220066DEGseq p-value: 2.42E-05, cuff diff p-value :0.0234
WBGene00000680DEGseq p-value: 0, cuff diff p-value :0.00055
WBGene00015102DEGseq p-value: 0, cuff diff p-value :0.00235
WBGene00007337DEGseq p-value: 2.24E-15, cuff diff p-value :0.0004
WBGene00016638DEGseq p-value: 0, cuff diff p-value :0.0054
WBGene00000748DEGseq p-value: 0, cuff diff p-value :0.00105
WBGene00000754DEGseq p-value: 0, cuff diff p-value :0.0014
WBGene00000713DEGseq p-value: 0, cuff diff p-value :0.0012
WBGene00012435DEGseq p-value: 8.02E-09, cuff diff p-value :0.00335
WBGene00000696DEGseq p-value: 0, cuff diff p-value :0.0021
WBGene00000647DEGseq p-value: 0, cuff diff p-value :0.0041
WBGene00000712DEGseq p-value: 0, cuff diff p-value :0.0021
WBGene00002064DEGseq p-value: 3.91E-268, cuff diff p-value :0.00495
WBGene00001387DEGseq p-value: 0, cuff diff p-value :0.0023
WBGene00000716DEGseq p-value: 1.56E-306, cuff diff p-value :0.00905
WBGene00000473DEGseq p-value: 0, cuff diff p-value :0.00095
WBGene00000608DEGseq p-value: 0, cuff diff p-value :0.002
WBGene00000703DEGseq p-value: 0, cuff diff p-value :0.0024
WBGene00001607DEGseq p-value: 1.19E-105, cuff diff p-value :0.02645
WBGene00000751DEGseq p-value: 0, cuff diff p-value :0.00705
WBGene00003375DEGseq p-value: 6.59E-69, cuff diff p-value :0.0113
WBGene00011155DEGseq p-value: 3.63E-164, cuff diff p-value :0.00935
WBGene00018393DEGseq p-value: 2.23E-165, cuff diff p-value :0.0154
WBGene00008218DEGseq p-value: 5.23E-148, cuff diff p-value :0.0157
WBGene00013052DEGseq p-value: 2.08E-08, cuff diff p-value :0.00545
WBGene00001397DEGseq p-value: 1.82E-290, cuff diff p-value :0.0129
WBGene00003161DEGseq p-value: 1.44E-12, cuff diff p-value :0.04925
WBGene00003541DEGseq p-value: 7.74E-10, cuff diff p-value :0.00115
WBGene00016824DEGseq p-value: 1.56E-10, cuff diff p-value :0.0015
WBGene00004410DEGseq p-value: 0, cuff diff p-value :0.02875
WBGene00016534DEGseq p-value: 5.48E-61, cuff diff p-value :0.0418
WBGene00010555DEGseq p-value: 1.14E-07, cuff diff p-value :0.00645
WBGene00006926DEGseq p-value: 0, cuff diff p-value :0.0466
WBGene00015899DEGseq p-value: 1.14E-07, cuff diff p-value :0.00645
WBGene00010351DEGseq p-value: 5.78E-101, cuff diff p-value :0.04925
WBGene00016491DEGseq p-value: 6.46E-07, cuff diff p-value :0.01125
WBGene00003994
Attribute_ofRNASeq
RegulationRegulated_by_geneWBGene00004178
Associated_withLife_stageWBls:0000038