WormBase Tree Display for Gene: WBGene00007709

WBGene00007709 SMap: S_parent: Sequence: C25A1
  Identity: Version: 2
    Name: CGC_name: clec-87 Paper_evidence: WBPaper00027679
      Sequence_name: C25A1.8
      Molecular_name: C25A1.8
        C25A1.8.1
        CE08374
      Other_name: cpg-5
        CELE_C25A1.8 Accession_evidence: NDB BX284601
      Public_name: clec-87
    DB_info: Database: AceView gene 1K760
        WormQTL gene WBGene00007709
        WormFlux gene WBGene00007709
        NDB locus_tag CELE_C25A1.8
        Panther gene CAEEL|WormBase=WBGene00007709|UniProtKB=Q9XVS3
          family PTHR22802
        NCBI gene 172885
        RefSeq protein NM_060281.6
        SwissProt UniProtAcc Q9XVS3
        TREEFAM TREEFAM_ID TF316271
        UniProt_GCRP UniProtAcc Q9XVS3
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:48 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 15 Jun 2006 12:00:12 WBPerson2970 Name_change: CGC_name: clec-87
                Other_name: cpg-5
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: clec
    Allele (18)
    Strain: WBStrain00050926
    RNASeq_FPKM (74)
    GO_annotation: 00102793
      00102794
      00102795
      00102796
      00102797
      00102798
    Ortholog (43)
    Paralog (24)
    Structured_description: Concise_description: clec-87 encodes a C-type lectin, paralogous to CLEC-88, C25B8.4, F26D10.12, and ZK858.3; CLEC-87 has a single chondroitin attachment site verified by mass spectrometry; clec-87 expression is upregulated in response to pathogen infection. Paper_evidence: WBPaper00027679
            WBPaper00038070
          Curator_confirmed: WBPerson1843
            WBPerson567
          Date_last_updated: 13 Sep 2011 00:00:00
      Automated_description: Predicted to enable carbohydrate binding activity. Predicted to be located in external side of plasma membrane. Is an ortholog of human CLEC2L (C-type lectin domain family 2 member L); KLRB1 (killer cell lectin like receptor B1); and KLRG1 (killer cell lectin like receptor G1). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C25A1.8
    Corresponding_transcript: C25A1.8.1
    Other_sequence (21)
    Associated_feature: WBsf649556
      WBsf664840
      WBsf664841
      WBsf664842
      WBsf976557
      WBsf976558
      WBsf976559
      WBsf984936
      WBsf220203
      WBsf220204
  Experimental_info: RNAi_result: WBRNAi00029175 Inferred_automatically: RNAi_primary
      WBRNAi00007540 Inferred_automatically: RNAi_primary
      WBRNAi00110398 Inferred_automatically: RNAi_primary
      WBRNAi00041148 Inferred_automatically: RNAi_primary
      WBRNAi00110399 Inferred_automatically: RNAi_primary
      WBRNAi00110397 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1027276
      Expr1033338
      Expr1145181
      Expr2010218
      Expr2028459
    Drives_construct: WBCnstr00033539
    Construct_product: WBCnstr00033539
    Microarray_results (25)
    Expression_cluster (270)
    Interaction (278)
    WBProcess: WBbiopr:00000008
      WBbiopr:00000039
  Map_info: Map: I Position: 4.7227 Error: 0.001544
    Positive: Positive_clone: C25A1 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference (17)
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene