WormBase Tree Display for Gene: WBGene00011336
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| WBGene00011336 | SMap | S_parent | Sequence | T01E8 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | ubxn-5 | Person_evidence | WBPerson2838 | |||||
| WBPerson4369 | |||||||||
| Sequence_name | T01E8.9 | ||||||||
| Molecular_name | T01E8.9 | ||||||||
| T01E8.9.1 | |||||||||
| CE34978 | |||||||||
| Other_name | CELE_T01E8.9 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | ubxn-5 | ||||||||
| DB_info | Database | AceView | gene | 2K526 | |||||
| WormQTL | gene | WBGene00011336 | |||||||
| WormFlux | gene | WBGene00011336 | |||||||
| NDB | locus_tag | CELE_T01E8.9 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00011336|UniProtKB=Q7YWU9 | |||||||
| family | PTHR23322 | ||||||||
| NCBI | gene | 3565635 | |||||||
| RefSeq | protein | NM_001027129.4 | |||||||
| SwissProt | UniProtAcc | Q7YWU9 | |||||||
| UniProt_GCRP | UniProtAcc | Q7YWU9 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:52 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 05 Jan 2006 11:22:20 | WBPerson2970 | Name_change | CGC_name | ubxn-5 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ubxn | ||||||||
| Allele (17) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00082688 | ||||||||
| 00082689 | |||||||||
| Ortholog (18) | |||||||||
| Structured_description | Concise_description | ubxn-5 encodes one of six C. elegans UBX (ubiquitin regulatory X) domain-containing proteins. | Paper_evidence | WBPaper00029386 | |||||
| WBPaper00037734 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 05 Apr 2011 00:00:00 | ||||||||
| Automated_description | Enriched in sperm and in male based on RNA-seq and single-cell RNA-seq studies. Is affected by several genes including daf-2; skn-1; and hsf-1 based on microarray and RNA-seq studies. Is affected by fifteen chemicals including Ethanol; methylmercuric chloride; and Sodium Chloride based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: Ubiquitin-like domain superfamily and UBX domain. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T01E8.9 | |||||||
| Corresponding_transcript | T01E8.9.1 | ||||||||
| Other_sequence | CJC10009_1 | ||||||||
| Experimental_info | Expr_pattern | Expr4672 | |||||||
| Expr4678 | |||||||||
| Expr1017027 | |||||||||
| Expr1034989 | |||||||||
| Expr1155769 | |||||||||
| Expr2035872 | |||||||||
| Drives_construct | WBCnstr00012166 | ||||||||
| WBCnstr00030731 | |||||||||
| Construct_product | WBCnstr00012166 | ||||||||
| WBCnstr00030731 | |||||||||
| Microarray_results | A_12_P114839 | ||||||||
| GPL13394_WBGene00011336 | |||||||||
| GPL13914_T01E8.9 | |||||||||
| GPL14144_T01E8.9_366-425_0.917_1_A | |||||||||
| GPL19516_CGZ0032669 | |||||||||
| GPL21109_T01E8.9 | |||||||||
| GPL8304_CE_WBGene00011336_A | |||||||||
| GPL8673_T01E8_9P00311 | |||||||||
| GPL8673_T01E8_9P00316 | |||||||||
| GPL8673_T01E8_9P00321 | |||||||||
| Expression_cluster (138) | |||||||||
| Interaction | WBInteraction000522650 | ||||||||
| WBInteraction000522656 | |||||||||
| WBInteraction000540349 | |||||||||
| WBInteraction000540350 | |||||||||
| WBInteraction000540351 | |||||||||
| WBInteraction000555825 | |||||||||
| WBInteraction000555826 | |||||||||
| Map_info | Map | II | Position | 2.30978 | Error | 0.001332 | |||
| Positive | Positive_clone | T01E8 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00029386 | ||||||||
| WBPaper00034654 | |||||||||
| WBPaper00037734 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
