WormBase Tree Display for Gene: WBGene00001387
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WBGene00001387 | Evidence | Paper_evidence | WBPaper00005754 | ||||||
---|---|---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | F15B9 | ||||||
Identity | Version | 1 | |||||||
Name | CGC_name | far-3 | |||||||
Sequence_name | F15B9.1 | ||||||||
Molecular_name | F15B9.1 | ||||||||
F15B9.1.1 | |||||||||
CE09406 | |||||||||
Other_name | CELE_F15B9.1 | Accession_evidence | NDB | BX284605 | |||||
Public_name | far-3 | ||||||||
DB_info | Database | AceView | gene | 5N476 | |||||
WormQTL | gene | WBGene00001387 | |||||||
WormFlux | gene | WBGene00001387 | |||||||
NDB | locus_tag | CELE_F15B9.1 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00001387|UniProtKB=Q19478 | |||||||
family | PTHR31418 | ||||||||
NCBI | gene | 179785 | |||||||
RefSeq | protein | NM_073850.8 | |||||||
TREEFAM | TREEFAM_ID | TF316252 | |||||||
TrEMBL | UniProtAcc | Q19478 | |||||||
UniProt_GCRP | UniProtAcc | Q19478 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:24 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | far | ||||||||
Allele (13) | |||||||||
Strain | WBStrain00036364 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00108644 | ||||||||
Ortholog (27) | |||||||||
Paralog | WBGene00001385 | Caenorhabditis elegans | From_analysis | Panther | |||||
WormBase-Compara | |||||||||
WBGene00001386 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00001391 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00001389 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00001390 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00001388 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00015578 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00001392 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
Structured_description | Automated_description | Predicted to enable lipid binding activity. Predicted to be located in extracellular region. Expressed in vulva and in male. | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F15B9.1 | |||||||
Corresponding_transcript | F15B9.1.1 | ||||||||
Other_sequence (20) | |||||||||
Associated_feature | WBsf653275 | ||||||||
WBsf669538 | |||||||||
WBsf234760 | |||||||||
WBsf234761 | |||||||||
Experimental_info | RNAi_result | WBRNAi00013357 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00044695 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern (11) | |||||||||
Drives_construct | WBCnstr00003728 | ||||||||
WBCnstr00011727 | |||||||||
WBCnstr00013187 | |||||||||
WBCnstr00022266 | |||||||||
WBCnstr00036981 | |||||||||
Construct_product | WBCnstr00036981 | ||||||||
Microarray_results (18) | |||||||||
Expression_cluster (430) | |||||||||
Interaction | WBInteraction000133999 | ||||||||
WBInteraction000134000 | |||||||||
WBInteraction000135516 | |||||||||
WBInteraction000136831 | |||||||||
WBInteraction000503619 | |||||||||
WBInteraction000552048 | |||||||||
WBInteraction000571827 | |||||||||
WBInteraction000579990 | |||||||||
WBProcess | WBbiopr:00000121 | ||||||||
Map_info | Map | V | Position | 4.79254 | Error | 0.004559 | |||
Positive | Positive_clone | F15B9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Mapping_data | Multi_point | 4294 | |||||||
4295 | |||||||||
4296 | |||||||||
Pseudo_map_position | |||||||||
Reference | WBPaper00005356 | ||||||||
WBPaper00005754 | |||||||||
WBPaper00026629 | |||||||||
WBPaper00028789 | |||||||||
WBPaper00032031 | |||||||||
WBPaper00062002 | |||||||||
WBPaper00062388 | |||||||||
WBPaper00064370 | |||||||||
Remark | [Jan Bradley] We have tested fatty acid and retinol binding of 3 of far-1 to far-6; all are expressed and we have assumed the others are able to bind fatty acids based on sequence similarity. There is a slight problem with the gene finder/genome sequence of F15B9.3 as it predicts the far-5 gene to be continuous with the c terminal of a lag-2 gene. We've tried v hard to see if the whole lag 2/far gene is transcribed and it doesn't seem to be but we can find an sl-far gene transcript with specific primers for the c terminal. | ||||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
Method | Gene |