WormBase Tree Display for Gene: WBGene00003093
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| WBGene00003093 | SMap | S_parent | Sequence | F58B3 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | lys-4 | Person_evidence | WBPerson168 | |||||
| Sequence_name | F58B3.1 | ||||||||
| Molecular_name | F58B3.1 | ||||||||
| F58B3.1.1 | |||||||||
| CE06003 | |||||||||
| Other_name | CELE_F58B3.1 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | lys-4 | ||||||||
| DB_info | Database | AceView | gene | 4M386 | |||||
| WormQTL | gene | WBGene00003093 | |||||||
| WormFlux | gene | WBGene00003093 | |||||||
| NDB | locus_tag | CELE_F58B3.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003093|UniProtKB=Q20964 | |||||||
| family | PTHR23208 | ||||||||
| NCBI | gene | 178086 | |||||||
| RefSeq | protein | NM_069791.9 | |||||||
| TREEFAM | TREEFAM_ID | TF316378 | |||||||
| TrEMBL | UniProtAcc | Q20964 | |||||||
| UniProt_GCRP | UniProtAcc | Q20964 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:30 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | lys | ||||||||
| Allele (34) | |||||||||
| Strain | WBStrain00001930 | ||||||||
| WBStrain00032962 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00069770 | ||||||||
| 00069771 | |||||||||
| 00069772 | |||||||||
| 00069773 | |||||||||
| 00110569 | |||||||||
| 00110570 | |||||||||
| 00110571 | |||||||||
| Ortholog (46) | |||||||||
| Paralog | WBGene00003090 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00003091 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00003092 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00003096 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00003099 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00003095 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00003094 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00003098 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00003097 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to enable lysozyme activity. Involved in defense response to Gram-positive bacterium. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F58B3.1 | |||||||
| Corresponding_transcript | F58B3.1.1 | ||||||||
| Other_sequence (25) | |||||||||
| Associated_feature | WBsf652233 | ||||||||
| WBsf668351 | |||||||||
| WBsf718198 | |||||||||
| WBsf997893 | |||||||||
| WBsf230899 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00075954 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00033070 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00048947 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00015941 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram582 | ||||||||
| Expr1025658 | |||||||||
| Expr1152684 | |||||||||
| Expr2013315 | |||||||||
| Expr2031546 | |||||||||
| Drives_construct | WBCnstr00002718 | ||||||||
| WBCnstr00036235 | |||||||||
| Construct_product | WBCnstr00036235 | ||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (414) | |||||||||
| Interaction (108) | |||||||||
| Map_info | Map | IV | Position | 5.07601 | |||||
| Positive | Positive_clone | F58B3 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00005382 | ||||||||
| WBPaper00006437 | |||||||||
| WBPaper00024209 | |||||||||
| WBPaper00031802 | |||||||||
| WBPaper00034591 | |||||||||
| WBPaper00039111 | |||||||||
| WBPaper00040135 | |||||||||
| WBPaper00065026 | |||||||||
| WBPaper00065988 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| [140923 pad] Modified Map position as it was a reverse physical that could not be fixed by automated methods. | |||||||||
| Method | Gene |
