WormBase Tree Display for Gene: WBGene00003092
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| WBGene00003092 | SMap | S_parent | Sequence | Y22F5A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | lys-3 | Person_evidence | WBPerson168 | |||||
| Sequence_name | Y22F5A.6 | ||||||||
| Molecular_name | Y22F5A.6 | ||||||||
| Y22F5A.6.1 | |||||||||
| CE20201 | |||||||||
| Other_name | kreg-2 | Paper_evidence | WBPaper00042067 | ||||||
| CELE_Y22F5A.6 | Accession_evidence | NDB | BX284605 | ||||||
| Public_name | lys-3 | ||||||||
| DB_info | Database | AceView | gene | 5K762 | |||||
| WormQTL | gene | WBGene00003092 | |||||||
| WormFlux | gene | WBGene00003092 | |||||||
| NDB | locus_tag | CELE_Y22F5A.6 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003092|UniProtKB=Q9XXS1 | |||||||
| family | PTHR23208 | ||||||||
| NCBI | gene | 179430 | |||||||
| RefSeq | protein | NM_073243.4 | |||||||
| SwissProt | UniProtAcc | Q9XXS1 | |||||||
| TREEFAM | TREEFAM_ID | TF316378 | |||||||
| UniProt_GCRP | UniProtAcc | Q9XXS1 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:30 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 20 Feb 2015 13:10:03 | WBPerson2970 | Name_change | Other_name | kreg-2 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | lys | ||||||||
| Allele (22) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00104644 | ||||||||
| 00104645 | |||||||||
| 00104646 | |||||||||
| 00104647 | |||||||||
| 00104648 | |||||||||
| Ortholog (23) | |||||||||
| Paralog | WBGene00003090 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00003091 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00003096 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00003093 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00003099 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00003094 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00003095 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00003098 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00003097 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | lys-3 encodes one of a family of ten C. elegans lysozyme genes that are homologous to lysozymes in the amoeboid protozoan Entamoeba histolytica; lys-3 expression is upregulated in response to stress; lys-3 activity is required for the stress response to copper ion, and in response to copper ion stress, lys-3 expression is upregulated in a kgb-1-dependent manner. | Paper_evidence | WBPaper00005382 | |||||
| WBPaper00042067 | |||||||||
| Curator_confirmed | WBPerson48 | ||||||||
| WBPerson1843 | |||||||||
| Date_last_updated | 29 Jan 2015 00:00:00 | ||||||||
| Automated_description | Involved in stress response to copper ion. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y22F5A.6 | |||||||
| Corresponding_transcript | Y22F5A.6.1 | ||||||||
| Other_sequence | CJC08899_1 | ||||||||
| PSC01678_1 | |||||||||
| Acan_isotig12256 | |||||||||
| Tcol_isotig25082 | |||||||||
| EX008801.1 | |||||||||
| GW408393.1 | |||||||||
| Associated_feature | WBsf652979 | ||||||||
| WBsf234364 | |||||||||
| WBsf234365 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00075996 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00036715 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00020124 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00055693 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1010423 | ||||||||
| Expr1159219 | |||||||||
| Expr2013314 | |||||||||
| Expr2031545 | |||||||||
| Drives_construct | WBCnstr00036236 | ||||||||
| Construct_product | WBCnstr00036236 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (300) | |||||||||
| Interaction (116) | |||||||||
| Map_info | Map | V | Position | 2.4531 | Error | 0.000632 | |||
| Positive | Positive_clone | Y22F5A | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00005382 | ||||||||
| WBPaper00006437 | |||||||||
| WBPaper00024209 | |||||||||
| WBPaper00029437 | |||||||||
| WBPaper00031802 | |||||||||
| WBPaper00042067 | |||||||||
| WBPaper00061115 | |||||||||
| WBPaper00065331 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
